SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9316

Length: 561 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9316
AATGTATAAGAGAGGAACAAATGCAGCCATTTGTGGCAAAATTCGAGGGCATCTTTGACAAGTATAAGGGCACACAACATGTTTGTTGGCCATATGGCATCTCAGTAAAAAATGGGAAGATTTGCATTGTTATGAAGTTTTATGAAGGCTCTGTGGGAGACAAAATGGCCCATCTGAAAGGAGATCTCCCATTTTCAGATATCCTAAGGTATGGTATGGATGTGGTGCAAGGTGTAATGGAGCTGCATTCTAAAGGGATCCTGGTTCTTAATCTCAAACCTTTTAATTTCTTGCTTGATGAACATGATGTTGCAGTTATAGGAGACTTTGGAATACCAATGCTGCTACTGGGAATCCCATTGTCAAGTTCTGATTTGGCATTAAGATTGGGCACACCAAGTTACATGGCACCTGAACAATGGGGGGCAGATGTTAGAGGTCCAGTTTCATATGAAACAGATTGCTGGGGATTTGGCTGTAGCATTATAGAAATGCTCACAGGAGTCAGCCCCTGGTATGGGAAATCGGCATTGAAATTTATGATGCTAGTTGTTCTTAGGC

Ace file of the UniGene biog3_v1.0_unigene9316 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene891	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] ref\|NP_849560.1\| protein kinase family protein [Arabidopsis thaliana] ref\|NP_001031769.1\| protein kinase family protein [Arabidopsis thaliana] gb\|AAM13866.1\| unknown protein [Arabidopsis thaliana] gb\|AA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	protein kinase family protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	73%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	73%
Blast2go	ATP binding	GO:0005524	Molecular Function	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSF3

Fln msg: Distance to subject end: 74 aas, your sequence is shorter than subject: 186 - 594

Fln protein: CIREEQMQPFVAKFEGIFDKYKGTQHVCWPYGISVKNGKICIVMKFYEGSVGDKMAHLKGDLPFSDILRYGMDVVQGVMELHSKGILVLNLKPFNFLLDEHDVAVIGDFGIPMLLLGIPLSSSDLALRLGTPSYMAPEQWGADVRGPVSYETDCWGFGCSIIEMLTGVSPWYGKSALKFMMLVVLR

Protein Length: 187

Fln nts: AATGTATAAGAGAGGAACAAATGCAGCCATTTGTGGCAAAATTCGAGGGCATCTTTGACAAGTATAAGGGCACACAACATGTTTGTTGGCCATATGGCATCTCAGTAAAAAATGGGAAGATTTGCATTGTTATGAAGTTTTATGAAGGCTCTGTGGGAGACAAAATGGCCCATCTGAAAGGAGATCTCCCATTTTCAGATATCCTAAGGTATGGTATGGATGTGGTGCAAGGTGTAATGGAGCTGCATTCTAAAGGGATCCTGGTTCTTAATCTCAAACCTTTTAATTTCTTGCTTGATGAACATGATGTTGCAGTTATAGGAGACTTTGGAATACCAATGCTGCTACTGGGAATCCCATTGTCAAGTTCTGATTTGGCATTAAGATTGGGCACACCAAGTTACATGGCACCTGAACAATGGGGGGCAGATGTTAGAGGTCCAGTTTCATATGAAACAGATTGCTGGGGATTTGGCTGTAGCATTATAGAAATGCTCACAGGAGTCAGCCCCTGGTATGGGAAATCGGCATTGAAATTTATGATGCTAGTTGTTCTTAGGC

Fln Alignment:

Contig9316___GISVKNGKICIVMKFYEG-SVGDKMAHLKGDLPFSDILRYGMDVVQGVMELHSKGILVLNLKPFNFLLDEHDVAVIGDFGIPMLLLGIPLSSSDLALRLGTPSYMAPEQWGADVRGPVSYETDCWGFGCSIIEMLTGVSPW
C0PSF3_________________GACTRPPNLCIVTEFMSGGSVYDYLHKQKGVFKLPALLKVAIDVSRGMDYLHQNNIIHRDLKAANLLMDENEVVKVADFGVAR----VQAQSGVMTAETGTYRWMAPE---VIEHKPYDQKADVFSFGIVLWELLTGKLPY

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
214	25	75			0.996473
218			75	25	0.996473
420	16			83	0.994512
421	16			83	0.994512
422		83		16	0.994512
423	83		16		0.994512
542	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain