SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9313

Length: 224 nt

UniGene Fasta

>biog3_v1.0_unigene9313
AATGTTGTACGTGCTGGCGCTGTTAAACATCTTATTAGTCTAATGGAGCCTGCAGCTGGAATGGTAGATAAAGCTGTGGCTGTTTTGGCCAATCTTGCAACTATTCATGAAGGTCGAGCTGCAATTGGTGAGGAGCGTGGCATTCCTGCTTTGGTAGAAGTAGTTGAAATTGGTTCACAAAGGGGAAAGGAAAAATGCAGCAGCAGCTCTACTCCAACTACATT

Ace file of the UniGene biog3_v1.0_unigene9313

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2352	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KAP multi-domain protein	-	-	6.0e-08	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	u-box domain-containing protein 4-like	-	-	0.0	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 74 - 497

Fln protein: NVVRAGAVKHLISLMEPAAGMVDKAVAVLANLATIHEGRAAIGEERGIPALVEVVEIGSQRGKEKCSSSSTPTT

Protein Length: 75

Fln nts: AATGTTGTACGTGCTGGCGCTGTTAAACATCTTATTAGTCTAATGGAGCCTGCAGCTGGAATGGTAGATAAAGCTGTGGCTGTTTTGGCCAATCTTGCAACTATTCATGAAGGTCGAGCTGCAATTGGTGAGGAGCGTGGCATTCCTGCTTTGGTAGAAGTAGTTGAAATTGGTTCACAAAGGGGAAAGGAAAAATGCAGCAGCAGCTCTACTCCAACTACATT

Fln Alignment:

Contig9313___VRAGAVKHLISLM-EPAAGMVDKAVAVLANLATIHEGRAAIGEERGIPALVEVVEIGSQRGKEKCSS
C0PSB5_________________VRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAA

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
27	66			33	0.997452
28		66	33		0.997452
29	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain