SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9295

Length: 216 nt

UniGene Fasta

>biog3_v1.0_unigene9295
TCGACCACAAGAGGTGCCATGGCAGAAAGAGCTTGCCAACACTGTCCATTTTATGGGAGTGATAGGTCGGCCCGTTCAGTTCAAATACACGCAATCGGGCAAAGCGTTTGCATGGACTAGAATCGGAGTTAGAAGCGGTAGTGACGAGGAAACCATGTGGTTTACCTTGACATTTTGGAATGAGTTAAGACAGAAACTGCAGCACAGCATTACATT

Ace file of the UniGene biog3_v1.0_unigene9295

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10355	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Single-strand binding protein (ISS) [Ostreococcus tauri] emb\|CAL50423.1\| Single-strand binding protein (ISS) [Ostreococcus tauri]	-	-	1.0e-22	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	single-strand binding protein	-	-	0.0	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	single-stranded DNA binding	GO:0003697	Molecular Function	0.0	59%

Source	InterPros	Term	Type	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Primosome PriB/single-strand DNA-binding	IPR000424	-	-
Sma3	Single-strand DNA-binding	IPR011344	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRA8

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 71 - 390

Fln protein: RPQEVPWQKELANTVHFMGVIGRPVQFKYTQSGKAFAWTRIGVRSGSDEETMWFTLTFWNELRQKLQHSIT

Protein Length: 72

Fln nts: TCGACCACAAGAGGTGCCATGGCAGAAAGAGCTTGCCAACACTGTCCATTTTATGGGAGTGATAGGTCGGCCCGTTCAGTTCAAATACACGCAATCGGGCAAAGCGTTTGCATGGACTAGAATCGGAGTTAGAAGCGGTAGTGACGAGGAAACCATGTGGTTTACCTTGACATTTTGGAATGAGTTAAGACAGAAACTGCAGCACAGCATTACATT

Fln Alignment:

Contig9295___RPQEVPWQKELANTVHFMGVIGRPVQFKYTQSGKAFAWTRIGVRSGSDEETMWFTLTFWNELRQ
A9NRA8_________________RPQEVPWQKELANTVHFIGTIGSPVQFKHTQSGKALAWTRLAVRSGSNGETMWFTLMFWNELAE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain