SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9293

Length: 1528 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9293

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13605	50/51

Source	Descriptions	Term	Type	Identity
AutoFact	cystathionine gamma-synthase [Mesembryanthemum crystallinum]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	cystathionine gamma-synthase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cystathionine gamma-synthase.	EC:2.5.1.48	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Cysteine and methionine metabolism	00270	77%
Blast2go	Selenocompound metabolism	00450	77%
Blast2go	Sulfur metabolism	00920	77%
Blast2go	Biosynthesis of plant hormones	01070	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	77%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	77%
Blast2go	cystathionine gamma-synthase activity	GO:0003962	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL39

Fln msg: your sequence is shorter than subject: 456 - 521

Fln protein: MNFVRQLSIKARRNCSNIGVAQVVAASVTNIPLSSPPANTGEPFVLNGNNSVQADGALLEKDFITPDGTLAVHAGEKTGRVIVTDAIATPIVQTSTYTFKNTAELIAFQEGRYTSYEYGRYGNPTTQVAEEKISALEQAETTLLLASGMCATTTMMLALVPAGGHIITTTDCYRRTRQFIQTVLPKMGITATVIDPADIDSLEMALEQNNVSLFFSESPTNPYLRCIDIELVSKICHKNGVLVCIDCTFATPVNQKALALGADIVLHSVTKYIAGHNDVLAGSLSGSNKVIGTVRALHNVLGGVLSPNAAYLILRGIKTLHLRVQQQNSTALRIAHTLEAHPKVSRVHYPGLESHPEHHIAQRQMRGYGGVVSFEIAGDLQATSRFIDSLKIPYIAPSLGGCESLVEQPTIISYWDQSSEERARLGIKDNLVRFSCGVEAFDDIESDVLQALEAV*

Protein Length: 457

Fln nts: AATGAATTTCGTGAGGCAGCTGAGCATAAAGGCTCGCCGGAACTGTAGCAACATCGGCGTTGCGCAGGTGGTGGCGGCTTCTGTCACAAATATTCCGTTGTCCTCGCCCCCCGCGAACACCGGGGAGCCTTTCGTGCTCAACGGGAATAATAGTGTACAGGCCGATGGCGCTCTGCTAGAGAAGGACTTTATTACCCCCGATGGAACCCTCGCCGTCCATGCTGGTGAAAAGACAGGACGTGTTATAGTCACCGATGCAATTGCTACTCCAATTGTTCAGACATCTACCTACACTTTCAAAAATACTGCCGAATTAATTGCATTCCAGGAGGGAAGATACACAAGTTATGAATATGGACGCTATGGCAACCCGACCACGCAGGTTGCCGAGGAAAAAATCAGTGCTCTTGAACAGGCTGAGACAACCTTATTACTGGCCTCAGGTATGTGTGCTACCACAACCATGATGCTGGCATTGGTTCCGGCAGGGGGGCACATAATTACTACCACTGATTGCTATCGGCGAACCAGGCAGTTCATCCAAACAGTACTGCCAAAAATGGGAATCACAGCCACAGTAATTGACCCTGCTGACATAGATTCTCTTGAAATGGCTTTGGAGCAAAACAATGTTTCTCTGTTCTTCTCTGAGTCTCCCACAAACCCTTATCTTCGATGTATTGATATTGAGCTGGTCTCCAAGATTTGTCATAAAAATGGTGTATTGGTTTGTATAGATTGTACTTTTGCAACGCCTGTTAACCAGAAAGCGTTAGCACTCGGCGCAGACATTGTATTGCATTCAGTAACTAAATATATTGCAGGTCATAATGATGTTCTTGCAGGCAGTTTGAGTGGTTCAAACAAGGTTATTGGCACAGTACGTGCTTTGCACAATGTCTTGGGAGGTGTATTAAGTCCAAATGCAGCGTACTTGATTCTTCGCGGCATAAAGACCCTGCACCTTCGTGTACAGCAACAAAATTCAACAGCTTTAAGGATTGCCCACACTTTAGAGGCACATCCAAAGGTTTCTCGTGTCCATTATCCTGGCCTTGAAAGTCATCCAGAGCATCACATTGCCCAGCGACAAATGAGGGGATATGGTGGTGTGGTCAGTTTTGAGATTGCTGGAGACTTGCAGGCTACGTCCCGTTTTATTGATTCATTAAAAATTCCTTACATTGCCCCCTCTCTAGGAGGTTGTGAAAGCCTTGTTGAGCAGCCTACCATTATTTCCTACTGGGATCAGAGCTCTGAAGAGAGAGCTCGTCTTGGTATCAAGGACAATTTAGTTCGATTTAGCTGTGGAGTTGAAGCCTTCGACGACATAGAAAGTGATGTCTTACAGGCTTTGGAAGCTGTCTAA___TGTATTAGCAACTAAGCTGAACTGTTTTGGTGTGCTTTCTAGTCATATCAAACTTTTTGCTGTTGCATAGAGAGATACCATTGCTTGAAAACATTCTTCATTAAAGCACATGCCAAACTTTGTTGAGCTTTGTTCAGCATGACAGGTTGTCTCGTAGGG

Fln Alignment:

Contig9293___NFVRQLSIKARRNCSNIGVAQVVAASVTNIPLSSPPANTGEPFVLNGNNSVQADGALLEKDFITPDGTLAVHAGEKTGRVIVTDAIATPIVQTSTYTFKNTAELIAFQEGRYTSYEYGRYGNPTTQVAEEKISXXXXXXXXXXXXSGMCATTTMMLALVPAGGHIITTTDCYRRTRQFIQTVLPKMGITATVIDPADIDSLEMALEQNNVSLFFSESPTNPYLRCIDIELVSKICHKNGVLVCIDCTFATPVNQKALALGADIVLHSVTKYIAGHNDVLAGSLSGSNKVIGTVRALHNVLGGVLSPNAAYLILRGIKTLHLRVQQQNSTALRIAHTLEAHPKVSRVHYPGLESHPEHHIAQRQMRGYGGVVSFEIAGDLQATSRFIDSLKIPYIAPSLGGCESLVEQPTIISYWDQSSEERARLGIKDNLVRFSCGVEAFDDIESDVLQALEAV
B8LL39_________________NFVRQLSIKARRNCSNIGVAQVAAASVTNIPVSSAPANAGEPFVLTCNNSVQADGALVE-DFVSPDGTLAVHSGEKTGRAIVTDAIATPIVQTSTYTFKNTAELIAFQEGRHISYEYGRYGNPTTQVAEEKISALERAETTLLLASGMCATTTMMLALLPAGGHIITTTDCYRRTRQFIQTVLPKMGIKATVIDPADIDSLELALEENNVSLFFSESPTNPYLRCIDIELVSKICHRKGVLVCIDCTFATPVNQKALALGADIVLHSVTKYIAGHNDVLAGSLSGSNKIIGAVRALHNVLGGVLSPNAAYLILRGIKTLHLRVQQQNSTALRIARTLEAHPKVSRVHYPGLESHPEHHIAKRQMSGFGGVVSFEIVGDLQATSRFIDSLKIPYIAPSLGGCESLVEQPTIISYWDQSSEERARLGIKDNLVRFSCGVEAFDDIESDVLQALEAV

SNPs (tot: 4)

Position	A %	C %	T %	Probability
1392		87	12	0.992554
1418	12		87	0.992554
1426	80	20		0.995493
1475	33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain