SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9257

Length: 381 nt

UniGene Fasta

>biog3_v1.0_unigene9257
GAGGTGGAGAATACATGCAGCGGGAAAAGGAAATGATGGAGGTGGACAGAGACATTGCTGAGCAGGTGGAATATAATTTTGGCAATGGCATGGAAGAACCTCCGACATCTGGAAAGCTGCCTAAAAAGATTCTGAAGGATTTCTTCTACGGTACAACCTCCACATTGGATGCCACACTGGCTTCTCTGTTGCTCCGATCATGTCCAACCAGGGCACTGACAAACCTGAGCCTGGAGACCACAGATGAGCGGTATGGGGTTGTTCCAAGAGTTTATATCAAAACTATTAAAGATAACGCGCTCTCTCTTGCCAAGCAAGAAGAGCTCATTGCCAATTCGCCACCACAGAAGGTTTACAGTCTGGACACAGACCATAGACATT

Ace file of the UniGene biog3_v1.0_unigene9257

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2663	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative alpha/beta hydrolase; 66690-68793 [Arabidopsis thaliana]	-	-	5.0e-37	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	protein	-	-	0.0	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	62%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	62%
Blast2go	Drug metabolism - other enzymes	00983	62%
Blast2go	Metabolic pathways	01100	62%
Blast2go	Biosynthesis of secondary metabolites	01110	62%

Source	GOs	Term	Type	Identity
Blast2go	indoleacetic acid conjugate metabolic process	GO:0033473	Biological Process	62%
Blast2go	shoot development	GO:0048367	Biological Process	62%
Blast2go	methyl indole-3-acetate esterase activity	GO:0080030	Molecular Function	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQW9

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 126 - 278

Fln protein: GGEYMQREKEMMEVDRDIAEQVEYNFGNGMEEPPTSGKLPKKILKDFFYGTTSTLDATLASLLLRSCPTRALTNLSLETTDERYGVVPRVYIKTIKDNALSLAKQEELIANSPPQKVYSLDTDHRH

Protein Length: 127

Fln nts: GAGGTGGAGAATACATGCAGCGGGAAAAGGAAATGATGGAGGTGGACAGAGACATTGCTGAGCAGGTGGAATATAATTTTGGCAATGGCATGGAAGAACCTCCGACATCTGGAAAGCTGCCTAAAAAGATTCTGAAGGATTTCTTCTACGGTACAACCTCCACATTGGATGCCACACTGGCTTCTCTGTTGCTCCGATCATGTCCAACCAGGGCACTGACAAACCTGAGCCTGGAGACCACAGATGAGCGGTATGGGGTTGTTCCAAGAGTTTATATCAAAACTATTAAAGATAACGCGCTCTCTCTTGCCAAGCAAGAAGAGCTCATTGCCAATTCGCCACCACAGAAGGTTTACAGTCTGGACACAGACCATAGACATT

Fln Alignment:

Contig9257___GGEYMQREKEMMEVDRDIAEQVEYNFGNGMEEPPTSGKLPKKILKDFFYGXXXXXXXXXXXXXXRSCPTRALTNLSLETTDERYGVVPRVYIKTIKDNALSLAKQEELIANSPPQKVYSLDTDH
A9NQW9_________________GGESMQREKEMMELDKDILEKVEYNFGNGIGEPPTSGQVPRNFQKDFFYGTSSTLDVTLASLLLRPCPHMAVTNMSLKTTDEGYGVVPRVYIKTLKDNAFSLAKQEELITNSPPEKVYSIDSDH

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
101		75	25		0.996473
112	25		75		0.996473
285	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain