SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9251

Length: 1641 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9251

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8359	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	Protein transporter, putative n=1 Tax=Ricinus communis RepID=B9S215_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	target of myb protein 1	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	intra-Golgi vesicle-mediated transport	GO:0006891	Biological Process	77%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	77%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	77%
Blast2go	Golgi stack	GO:0005795	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	GAT	IPR004152	-	-
Sma3	Target of Myb protein 1	IPR014645	-	-
Sma3	VHS	IPR002014	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUS0

Fln msg:

Fln protein: MGDNNLMEKFNALGERLKVGGAEVSRKMSAGMSSMSGKMKELFQVQTQADKIVEEATSETLEEPDWALNLEICDMVNGERVSSQDLVRAVKKRIMQKTPRAQYLSLVLLETCVKNCEKVFSEIAAERILDEMVKMIDDPQTIVNNKEKALILIESWGESSEELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPQTFPSGEQVNALPGVPPSDVSQMPTYRDVLVPQDNTLSEAHVKEVFDVARNSIELLSTVLTSSPQQDVLKDELTTTLVEQCRQSQSTIQRMVERAGDNEAMLFEALNVNDEIQHIISKFEEMMKAPTSQSAPEPAMIPVRVEEEESPRAAPEDALVRNRTTKPSNARSSTAEEDALADLDEMIFGKKGGTSEEHGPKKKKDDDLISF*

Protein Length: 407

Fln nts: AATGTCCTTTCGCGAGCTGAAATTTGTTTAATGTACTTCGAGCCCAATTCTGTCCTTTCAACCTTACACGACCCCGATCTGCGAGCAGAACCAGAGTCTGGTCAACGTTTGAATTACTCGGAAAAACTAGTGGATATATGCCGAGTCGAAAGAACTTTTGGATAAATGTTTTTCTAGTGCAGTTTTCATTAGGGTTTGCAGACCCCTGAAAAACCTCTAAGAAGCTATAGCAATTCTGTAAATTAGCAGGGGAAAAGCATCTGTTTTTTTGGGTAAATTCTGGTTTGTTGTTGGAGTTGCTCAGGGAGAAATAACGGTAGCTTAGATCTTTTGCTTCCCTCTTATTGGGGTG_-_ATGGGGGACAATAATTTGATGGAGAAGTTCAACGCTTTGGGAGAGCGGTTGAAGGTAGGTGGAGCTGAAGTTAGCCGGAAAATGAGTGCGGGCATGAGCTCCATGAGTGGCAAAATGAAGGAGCTTTTCCAAGTTCAGACTCAGGCTGATAAAATTGTTGAAGAGGCCACATCAGAGACCCTGGAAGAGCCAGATTGGGCTCTGAATTTGGAGATTTGCGATATGGTCAACGGGGAGAGGGTTAGTAGCCAGGATCTTGTTCGTGCTGTCAAGAAAAGAATTATGCAGAAAACCCCCCGGGCTCAATACCTATCTCTAGTCTTGCTCGAGACTTGCGTTAAGAACTGTGAGAAGGTATTTTCCGAAATCGCAGCAGAGAGAATCCTTGATGAGATGGTGAAGATGATTGATGATCCCCAGACAATAGTGAATAACAAGGAGAAGGCTTTGATCCTCATTGAATCGTGGGGGGAATCCTCTGAGGAACTACGGTATTTGCCTGTGTTCGAGGAGACATACAAGAGCTTGAAATCCAGAGGAATAAGGTTTCCTGGACGAGACAATGAGAGTTTGGCCCCAATATTCACTCCTCCACAGACTTTTCCTAGTGGAGAACAAGTTAATGCGTTGCCTGGTGTACCACCTTCTGATGTTTCTCAGATGCCAACTTATCGAGATGTTCTTGTCCCTCAGGACAATACTTTATCTGAGGCTCATGTAAAAGAAGTGTTTGATGTTGCTCGTAATAGTATTGAGCTACTTTCTACCGTGTTGACTTCTTCTCCACAGCAAGATGTATTGAAGGATGAACTAACTACTACATTGGTGGAGCAATGCCGGCAATCACAATCTACTATACAGAGGATGGTAGAGAGAGCCGGTGATAATGAGGCCATGCTTTTTGAGGCTTTAAATGTGAATGACGAGATCCAACATATAATTTCGAAGTTTGAAGAAATGATGAAGGCCCCAACATCTCAATCTGCACCTGAACCTGCAATGATACCTGTCCGTGTGGAAGAGGAAGAGTCGCCTCGAGCTGCTCCAGAAGATGCCCTTGTCAGGAACCGCACTACAAAGCCCTCAAATGCCCGGTCGTCTACTGCAGAAGAAGATGCATTGGCTGATTTAGATGAGATGATATTTGGTAAGAAAGGAGGTACATCTGAAGAACATGGTCCTAAAAAGAAAAAGGATGATGACCTAATTTCATTTTAG___GCCTTCTGCTATCCCATTCATTAACTATGATTGCTTCTAGCCTCTACTATATTGTACATTTAGATGACATT

Fln Alignment:

Contig9251___MGDNNLMEKFNALGERLKVGGAEVSRXXXXXXXXXXXXXXELFQVQTQADKIVEEATSETLEEPDWALNLEICDMVNGERVSSQDLVRAVKKRIMQKTPRAQYLSLVLLETCVKNCEKVFSEIAAERILDEMVKMIDDPQTIVNNKEKALILIESWGESSEELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPQTFPSGEQVNALPGVPPSDVSQMPTYRDVLVPQDNTLSEAHVKEVFDVARNSIELLSTVLTSSPQQDVLKDELTTTLVEQCRQSQSTIQRMVERAGDNEAMLFEALNVNDEIQHIISKFEEMMKAPTSQSAPEPAMIPVRVEEEESPRAAPEDALVRNRTTKPSNARSSTAEEDALADLDEMIFGKKGGTSEEHGPKKKKDDDLISF
A9NUS0_________________MADNNLMEKFNALGERLKVGGAEVSRKMSAGMSSMSDKMKELFQVQTQADKIVEEATSENLEEPDWALNLEICDMVNGERVGSQDLVRAVKKRIMQKTPRAQYLSLVLLETCVKNCEKVFSEIAAERVLDEMVKMIDDPQTIVNNREKALILIESWGESSEELRYLPVFEETYKSLKSRGIRFPGRDNESLAPIFTPPQTFPSGEQVDALPGVPPSAGSQMQTYRDVLVPRDDTLSESHVKEVFDVARNSIELLSTVLTSSPQQDALKDELTTTLVEQCRQSQYTVQRMVERAGDNEALLFEALNVNDEIQHILSKFEEMTKAPTSQSVPEPAMIPVRVEEEESPRAPPEDALVRNRTTKPLNARSSTAEEDALADLDEMIFGKKGGTSEEHGSKKQKDDDLISF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
30	66		33		0.997452
32		33		66	0.997452
1235	25		75		0.996473
1236	25		75		0.996473
1363	20	80			0.995493
1399	16		83		0.994512
1400	16	83			0.994512
1402		80	20		0.995493
1403		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain