SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9211

Length: 361 nt

UniGene Fasta

>biog3_v1.0_unigene9211
AGAACGCAACCTGCTGGAGATTACCGATGGAATCAGAAACAGTTAATGGCGGATCTTGCAGGCCTCTGCACGTTGTTGCAGTTCCACTTCCAGTTCAGGGGCATATGACTCCCATGTTTAATTTCTCGAAGAAGCTAGCAGCGAAGGGTGTTATTGTCACGTTTGTTACTACGGAAGCTTGTTATGCGAACATCATTAAAGCCCATAACGGGGAGGACCCCTTCTCCCACGACCGGAGCTTGGGTTTAGATATCCGCTCCCTTCAGGTTAGTGATGGATTGCCCCTGGAAGCTGATAGATCGTTGAATTTGGAGTTTATAGAATCATTCCAGACTAATATGATGCCGCATGTTGAAGAGCT

Ace file of the UniGene biog3_v1.0_unigene9211

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12085	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucosyltransferase n=1 Tax=Dianthus caryophyllus RepID=A7M6J0_DIACA	-	-	2.0e-12	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	udp-glycosyltransferase-like protein	-	-	0.0	61%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	61%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	61%
Blast2go	N-Glycan biosynthesis	00510	61%
Blast2go	Mucin type O-Glycan biosynthesis	00512	61%
Blast2go	Various types of N-glycan biosynthesis	00513	61%
Blast2go	Other types of O-glycan biosynthesis	00514	61%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	61%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	61%
Blast2go	Lipopolysaccharide biosynthesis	00540	61%
Blast2go	Peptidoglycan biosynthesis	00550	61%
Blast2go	Glycerolipid metabolism	00561	61%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	61%
Blast2go	Sphingolipid metabolism	00600	61%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	61%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	61%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	61%
Blast2go	Carotenoid biosynthesis	00906	61%
Blast2go	Zeatin biosynthesis	00908	61%
Blast2go	Flavonoid biosynthesis	00941	61%
Blast2go	Anthocyanin biosynthesis	00942	61%
Blast2go	Flavone and flavonol biosynthesis	00944	61%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	61%
Blast2go	Betalain biosynthesis	00965	61%
Blast2go	Biosynthesis of type II polyketide products	01057	61%
Blast2go	Metabolic pathways	01100	61%
Blast2go	Biosynthesis of secondary metabolites	01110	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	61%
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNU7

Fln msg: Distance to subject end: 378 aas, your sequence is shorter than subject: 111 - 491

Fln protein: MESETVNGGSCRPLHVVAVPLPVQGHMTPMFNFSKKLAAKGVIVTFVTTEACYANIIKAHNGEDPFSHDRSLGLDIRSLQVSDGLPLEADRSLNLEFIESFQTNMMPHVEE

Protein Length: 112

Fln nts: AGAACGCAACCTGCTGGAGATTACCG_-_ATGGAATCAGAAACAGTTAATGGCGGATCTTGCAGGCCTCTGCACGTTGTTGCAGTTCCACTTCCAGTTCAGGGGCATATGACTCCCATGTTTAATTTCTCGAAGAAGCTAGCAGCGAAGGGTGTTATTGTCACGTTTGTTACTACGGAAGCTTGTTATGCGAACATCATTAAAGCCCATAACGGGGAGGACCCCTTCTCCCACGACCGGAGCTTGGGTTTAGATATCCGCTCCCTTCAGGTTAGTGATGGATTGCCCCTGGAAGCTGATAGATCGTTGAATTTGGAGTTTATAGAATCATTCCAGACTAATATGATGCCGCATGTTGAAGAGCT

Fln Alignment:

Contig9211___MESETVNGGSCRPLHVVAVPLPVQGHMTPMFNFSKKLAAKGVIVTFVTTEACYANIIKAHNGEDPFSHDRSLGLDIRSLQVSDGLPLEADRSLNL-EFIESFQTNMMPHVEE
B8LNU7_________________MESKTINGLSCRPLHVVAVPLPVQGHITPMFNFAKKLAAKGVTVTFVNTEACYANITKARNGEDPFSHAQSLGLDIRSAQISDGLPLEFDRSLNAEEFIESFETNMIPHVEE

SNPs (tot: 4)

Position	A %	C %	T %	Probability
316	25		75	0.996473
317		25	75	0.996473
318	25		75	0.996473
319	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain