SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9201

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9201
AATATGAACAACTTCAGTCTCAAGGAATACGTGCAGATCAGGCTGGTCATTCTTTGCAGTGGACAAGCCCATCTGGGCAATCTCTCAGTCCAACTCAGCAAGCTGTTATCTATGGTTCAGAAATGCAAAACATGCAGAGAAGCCCTGTCAGCCTTCCACCAGCTCCTTGGGATACTCAAGCTATGGAGAATGTGCCACAGATGGAAAACAGGTGGCCGGGAAATAATACACCAGGACAACAACATTTTCAGTTACAAGAAGTTTCAGCATTTAGTCAGTTTAAGCCAGGGTATTCTATAGGTGCACAGGATGAACTGATGAGAGGGACACAAAGCCTTTCACTCTACGATGGGAGAAATATTAATCCATATCAAATGAATTCTCCTAATCCATATCAAATGAATTCTCCGTATATGCAGCAGTCGCCGGTGCCCAGTAAGCAAGTTAAGGCTGAAGATAGGTTGTTTAAGGATTTAGTTGACTTGGCGAAATCAAAGACTAAAGCAACATCTAGTAATGCAGGGACATTG

Ace file of the UniGene biog3_v1.0_unigene9201 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3437	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	VHS and GAT domain protein [Glycine max]	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	vhs and gat domain protein	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	0.0	58%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	GAT	IPR004152	-	-
Sma3	VHS	IPR002014	-	-
Sma3	VHS subgroup	IPR018205	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPG6

Fln msg: STOP codon was not found. Distance to subject end: 0 aas, your sequence is shorter than subject: 176 - 595

Fln protein: YEQLQSQGIRADQAGHSLQWTSPSGQSLSPTQQAVIYGSEMQNMQRSPVSLPPAPWDTQAMENVPQMENRWPGNNTPGQQHFQLQEVSAFSQFKPGYSIGAQDELMRGTQSLSLYDGRNINPYQMNSPNPYQMNSPYMQQSPVPSKQVKAEDRLFKDLVDLAKSKTKATSSNAGTL

Protein Length: 177

Fln nts: AATATGAACAACTTCAGTCTCAAGGAATACGTGCAGATCAGGCTGGTCATTCTTTGCAGTGGACAAGCCCATCTGGGCAATCTCTCAGTCCAACTCAGCAAGCTGTTATCTATGGTTCAGAAATGCAAAACATGCAGAGAAGCCCTGTCAGCCTTCCACCAGCTCCTTGGGATACTCAAGCTATGGAGAATGTGCCACAGATGGAAAACAGGTGGCCGGGAAATAATACACCAGGACAACAACATTTTCAGTTACAAGAAGTTTCAGCATTTAGTCAGTTTAAGCCAGGGTATTCTATAGGTGCACAGGATGAACTGATGAGAGGGACACAAAGCCTTTCACTCTACGATGGGAGAAATATTAATCCATATCAAATGAATTCTCCTAATCCATATCAAATGAATTCTCCGTATATGCAGCAGTCGCCGGTGCCCAGTAAGCAAGTTAAGGCTGAAGATAGGTTGTTTAAGGATTTAGTTGACTTGGCGAAATCAAAGACTAAAGCAACATCTAGTAATGCAGGGACATTG

Fln Alignment:

Contig9201___YEQLQSQGIRADQAGHSLQWTSPSGQSLSPTQQAVIYGSEMQNMQ----RSPVSLPPAPWDTQAMENVPQMENRWPGNNTPGQQHFQLQEVSAFSQFKPGYSIGAQDELMRGTQSLSLYDGRNINPYQMNSPNPYQMNSPYMQQSPVPSKQVKAEDRLFKDLVDLAKSKTKATSSNAGTL
B8LPG6_________________YGQLQSQGVRADQAGHSLQWTSPSGQSLSPPQQALIYGSEMQNMQVQAQRSPVSLPPAPWDTQAMENVPQMENRWQGNITPGQQHFQLQEVSAFGQFKPGYSIVAQDELMRGTQNLSLYDGRNI--------NPYQMSSPYLQQSPVPSKQVKAEDKLFKDLVDLAKSKTKATSSNAGSL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
358	33			66	0.997452
361		66	33		0.997452
362		75		25	0.996473
434	25			75	0.996473
435		25	75		0.996473
436	25	75			0.996473
438			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain