SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9200

Length: 298 nt

UniGene Fasta

>biog3_v1.0_unigene9200
ATTGATTAGAGGGACACACAGCATTAAAGATACTTTGACAGCAGTTACTGGGGCTGTTGTACCGTTTCATCACACTGTTCTTGATGAGGGTGGTGTAAGCAATTTAGTTCTTGGTTTTGCACATTGTGGGATGGTTGCAGCTGCTCGTTGGATTGCACGGCTTGCAACTCCTTGCCTGTTGAATGCATTGGCTAAGTATCCAAACTTCAAGATCAAGGTTGTTGGACACTCTTTAGGTGGAGGAACAGCTGCTCTCTTGACATACGTACTAAGGGAGTACAAAGAGTTTTCATACATT

Ace file of the UniGene biog3_v1.0_unigene9200

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1703	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Triacylglycerol lipase, putative n=1 Tax=Ricinus communis RepID=B9RTA9_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	83%
Blast2go	lipase class 3 family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		82%
Blast2go	Drug metabolism - other enzymes	00983		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Biosynthesis of secondary metabolites	01110		82%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lipid catabolic process	GO:0016042	Biological Process	82%
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	82%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-
Sma3	Mono-/di-acylglycerol lipase, N-terminal	IPR005592	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HXV0

Fln msg: Distance to subject end: 391 aas, your sequence is shorter than subject: 99 - 672

Fln protein: LIRGTHSIKDTLTAVTGAVVPFHHTVLDEGGVSNLVLGFAHCGMVAAARWIARLATPCLLNALAKYPNFKIKVVGHSLGGGTAALLTYVLREYKEFSYI

Protein Length: 100

Fln nts: ATTGATTAGAGGGACACACAGCATTAAAGATACTTTGACAGCAGTTACTGGGGCTGTTGTACCGTTTCATCACACTGTTCTTGATGAGGGTGGTGTAAGCAATTTAGTTCTTGGTTTTGCACATTGTGGGATGGTTGCAGCTGCTCGTTGGATTGCACGGCTTGCAACTCCTTGCCTGTTGAATGCATTGGCTAAGTATCCAAACTTCAAGATCAAGGTTGTTGGACACTCTTTAGGTGGAGGAACAGCTGCTCTCTTGACATACGTACTAAGGGAGTACAAAGAGTTTTCATACATT

Fln Alignment:

Contig9200___LIRGTHSIKDTLTAVTGAVVPFHHTVLDEGGVSNLVLGFAHCGMVAAARWIARLATPCLLNALAKYPNFKIKVVGHSLGGGTAALLTYVLREYKEFS
F6HXV0_________________LIRGTHSIKDTLTAATGAVVPFHHTVVHEGGVSNLVLGYAHCGMVAAARWIAKLSTPCLTKALGEYPDYKVKIVGHSLGGGTAALLTYVLREQKELS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
39	33	66			0.997452
41			66	33	0.997452
42		66	33		0.997452
43	66			33	0.997452
288		33		66	0.997452
289	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain