SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9162

Length: 284 nt

UniGene Fasta

>biog3_v1.0_unigene9162
GAAGAACTTCGCGATCAGGTTGAATTCATGGAGAAAAATGAAGACGAAACCCTAGAGATCGCTGAAGGTGAAGCGGAGGGCAAGGTAGAAGAAGTGGTGTCCGAACCTCGATATGCCGTGAAGGAAATTGATGTAAAAGGCAAGGAAGCGGAGGGGTTCGGTGGAAGTCTTTTGAGTGACGAGGATGAATGGGAGGGAGTAGAGAGCACGGAGTTGGATGAAATGTTTGGTGTGGCCGCTTCTTACGTGGCATCCATGGAGGCTAACATGTCTCAGAAGACATT

Ace file of the UniGene biog3_v1.0_unigene9162

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16609	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Acyl-CoA-binding domain-containing protein 1 n=1 Tax=Arabidopsis thaliana RepID=ACBP1_ARATH	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	acyl- binding protein	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	69%
Blast2go	response to cold	GO:0009409	Biological Process	69%
Blast2go	response to lead ion	GO:0010288	Biological Process	69%
Blast2go	lead ion binding	GO:0032791	Molecular Function	69%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	phosphatidic acid binding	GO:0070300	Molecular Function	69%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%
Blast2go	glyoxysome	GO:0009514	Cellular Component	69%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Acyl-CoA-binding protein, ACBP	IPR000582	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	FERM/acyl-CoA-binding protein, 3-helical bundle	IPR014352	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYI9

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 94 - 403

Fln protein: EELRDQVEFMEKNEDETLEIAEGEAEGKVEEVVSEPRYAVKEIDVKGKEAEGFGGSLLSDEDEWEGVESTELDEMFGVAASYVASMEANMSQKT

Protein Length: 95

Fln nts: GAAGAACTTCGCGATCAGGTTGAATTCATGGAGAAAAATGAAGACGAAACCCTAGAGATCGCTGAAGGTGAAGCGGAGGGCAAGGTAGAAGAAGTGGTGTCCGAACCTCGATATGCCGTGAAGGAAATTGATGTAAAAGGCAAGGAAGCGGAGGGGTTCGGTGGAAGTCTTTTGAGTGACGAGGATGAATGGGAGGGAGTAGAGAGCACGGAGTTGGATGAAATGTTTGGTGTGGCCGCTTCTTACGTGGCATCCATGGAGGCTAACATGTCTCAGAAGACATT

Fln Alignment:

Contig9162___EELRDQVEFMEKNEDETLXXXXXXXXXXXXXXXXXPRYAVKEIDVKGKEAEGFGGSLLSDEDEWEGVESTELDEMFGVAASYVASMEANMSQK
A9NYI9_________________EELLDQVEFTEKNEDKTLEIAESETEVKVEEEVTGSGYAVKEIDVKGKETEGFGGSLLSDEDEWEGVESTELDEMFGVAASYVASMEANLSQK

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
257	33			66	0.997452
258		25	75		0.996473
259	33		66		0.997452
260	66			33	0.997452
261			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain