SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9155

Length: 503 nt

UniGene Fasta

>biog3_v1.0_unigene9155
GCATGTCGGAGTCTCTGTACGCTCGCAGCTACGGAGGATATTCAATCAAATTCTCCCTCGGCACTCCTCCACAGGATCTCTCGCTTATCATGGACACCGGCAGTGATGTCGTGTGGGTGCCCTGCACACAAAATTATACTTGTATGGACTGCCCTGCAAACAGCACTAATTCCAATGGGCTGTTTCTTCCGAGGATGTCCTCGTCTCGCGAGCTTCTAGCTTGCGATGATCCAAACTGCAAAAAATTTTACGGTGAAAGCACGGAGGACCTGTGTGGGAATTGTTCACAGAGCACCGCCCAGAAATGCTCTCGGAGACCTTAACTTTACCAGTGGAAGACGAAGGGCGAGCAGTTAGGAATTTCGTTGTGGGATGTTCGATACTTGCAATGGATGAACCTTCTGGAATTGCAGGATTTGGCAGGGGAGCTCTGTCTATGCCCTCCCAGCTTAAGCAGCAACACATAATTGGGAAAGATAGATTTGGGTATTGCCTTCAGAGCC

Ace file of the UniGene biog3_v1.0_unigene9155

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12683	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] gb\|AAK25903.1\|AF360193_1 unknown protein [Arabidopsis thaliana] emb\|CAB43423.1\| putative protein [Arabidopsis thaliana] gb\|AAK64083.1\| unknown protein [Arabidopsis thaliana] gb\|AAK96717.1\| Unknown pr	-	-	4.0e-26	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	aspartic proteinase nepenthesin-2-like	-	-	1.26029e-38	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.26029e-38	59%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	1.26029e-38	59%
Blast2go	membrane	GO:0016020	Cellular Component	1.26029e-38	59%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC09

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 214 aas, your sequence is shorter than subject: 167 - 370

Fln protein: MSESLYARSYGGYSIKFSLGTPPQDLSLIMDTGSDVVWVPCTQNYTCMDCPANSTNSNGLFLPRMSSSRELLACDDPNCKKFYGESTEDLCGNCSQSTAQxxxxETLTLPVEDEGRAVRNFVVGCSILAMDEPSGIAGFGRGALSMPSQLKQQHIIGKDRFGYCLQS

Protein Length: 168

Fln nts: GC_-_ATGTCGGAGTCTCTGTACGCTCGCAGCTACGGAGGATATTCAATCAAATTCTCCCTCGGCACTCCTCCACAGGATCTCTCGCTTATCATGGACACCGGCAGTGATGTCGTGTGGGTGCCCTGCACACAAAATTATACTTGTATGGACTGCCCTGCAAACAGCACTAATTCCAATGGGCTGTTTCTTCCGAGGATGTCCTCGTCTCGCGAGCTTCTAGCTTGCGATGATCCAAACTGCAAAAAATTTTACGGTGAAAGCACGGAGGACCTGTGTGGGAATTGTTCACAGAGCACCGCCCAGxxxxxxxxxxxxGAGACCTTAACTTTACCAGTGGAAGACGAAGGGCGAGCAGTTAGGAATTTCGTTGTGGGATGTTCGATACTTGCAATGGATGAACCTTCTGGAATTGCAGGATTTGGCAGGGGAGCTCTGTCTATGCCCTCCCAGCTTAAGCAGCAACACATAATTGGGAAAGATAGATTTGGGTATTGCCTTCAGAGCC

Fln Alignment:

Contig9155___MDTGSDVVWVPCTQNYTCMDCPANSTNSNGLFLPRMSSSRELLACDDPNCKKFYGESTEDLCGNCSQSTAQKCSxxxxxxxxxxxxxxxxxxMLSETLTLPVED-EG-RAVRNFVVGCSILAMDEPSGIAGFGRGALSMPSQLKQQHIIGKDRFGYCLQS
D5AC09_________________MDTGSDLVWVPCTRNYSCINCPEDSA-SNGVFLPRMSSSLHLVTCADSNCKTLYGNNTELLCQSCAGS-LKNCSxxxxxxxxxxxxxxxxxxLLTETLNLPLENGEGARAITHFAVGCSIVSSQQPSGIAGFGRGALSMPSQLGEH--IGKDRFAYCLQS

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
97	33	66			0.997452
98		66		33	0.997452
100			66	33	0.997452
300	25	75			0.996473
304	75			25	0.996473
306	75	25			0.996473
308		25	75		0.996473
392	33		66		0.997452
393		33	66		0.997452
396			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain