SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9142

Length: 1368 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9142

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2153	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	Cation-chloride cotransporter 1 n=3 Tax=Poaceae RepID=CCC1_ORYSJ	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	cation-chloride co-transporter 1	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	87%
Blast2go	sodium ion transport	GO:0006814	Biological Process	87%
Blast2go	chloride transport	GO:0006821	Biological Process	87%
Blast2go	sodium:potassium:chloride symporter activity	GO:0008511	Molecular Function	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%
Blast2go	integral to membrane	GO:0016021	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Na/K/Cl co-transporter superfamily	IPR004842	-	0.0	-
Sma3	Amino acid permease domain	IPR004841	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9L5

Fln msg:

Fln protein: LDLLDAPSWRPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIISLALASLLYYYVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLAAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHKEDQGLETGREDAMEAFSRARKRIALQAADMKRKMNAEGGSTSINELQVNKFLYTTLKLNATILRYSRMAAVVLVSLPPPPPNHPPYLYMEYMDILVENIPRLLMVRGYRKDVVTLFT*

Protein Length: 444

Fln nts: TTGGATCTTCTGGATGCACCAAGCTGGCGCCCAAGGTGGAAATTTCACCATTGGAGCCTTTCACTTATTGGTGCTATGCTTTGTATTGTTATCATGTTCCTGATATCTTGGACATTCACTATTATCTCTTTAGCACTTGCAAGCCTTTTATACTATTATGTATGTCTCAAGGGGAAAGCTGGTGACTGGGGAGATGGTTTCAAAAGTGCATATTTCCAACTTGCTTTGCGAAGTCTTCGCTCCTTAGGAGCGAATCAAGTCCATCCAAAGAACTGGTACCCAATTCCCCTGATATTCTGTAGGCCATGGGGCAAACTACCTGAGAATGTGCCTTGTCATCCAAAGCTAGCTGATTTTGCAAATTGCATGAAGAAAAAGGGTCGGGGCATGTCAATCTTCGTTTCAATATTAGATGGCGACTACAATGAAAAGGCCGAAGAAGCAAAAGTTGCATGTCGACAATTGGCTGCATATATTGATTATAAGAACTGTGAAGGGGTTGCAGAAATCATTGTAGCTGAGAACATGCAAGAAGGATTTCGTGGTATTGTCCAAACAATGGGCCTTGGAAATCTTAAGCCCAACATTGTTGTAATGCGTTACCCAGAAATATGGAGACAAGAAAATTCGAAAGAGATCTCAGAAACGTTTGTTAGCATCATAAATGACTGTATTGTTGCTAATAAAGCAGTTGTCACAGTGAAAGGTTTGGATGAATGGCCAGGAGAGTACCAGAAACAGTATGGAACAATTGACCTTTATTGGATAGTACGTGATGGCGGTCTCATGTTGCTTCTTTCTCAGCTCTTACTTACGAAGGAAAGCTTTGAGAGTTGTAAGATTCAGGTATTCTGCATCGCTGAAGAGGACACCGAGGCAGAGGAGTTGAAGACAGATGTAAAAAAGTTTCTGTACGACCTTCGCATGCAAGCTGAAGTAATTGTCATTACCATGAAATCATGGGAGGCACACAAAGAAGATCAAGGTTTAGAAACCGGACGTGAAGATGCCATGGAGGCATTTTCAAGAGCACGGAAACGTATAGCATTGCAGGCTGCAGACATGAAGAGGAAAATGAATGCAGAAGGAGGGTCCACATCTATAAATGAGCTTCAAGTTAATAAATTCCTTTACACTACTTTGAAACTAAATGCTACTATCTTGCGGTATTCAAGGATGGCAGCTGTCGTGTTAGTTAGTTTGCCACCACCACCACCAAATCATCCTCCATACCTCTACATGGAGTATATGGACATTTTGGTAGAGAACATCCCCAGACTTCTTATGGTTCGTGGATATCGAAAAGATGTCGTTACTCTTTTCACTTAG___AATTTTACCAGTCTTTACTGGTCAATTATTTGCAACATT

Fln Alignment:

Contig9142___LDLLDAPSWRPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIIXXXXXXXXXXXVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLAAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQYGTIDLYWIVRDGGXXXXXXXXXXTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHKEDQGLETGREDAMEAFSRARKRIALQAADMKRKMNAEGGSTSINELQVNKFLYTTLKLNATILRYSRMAAVVLVSLXXXXXXXXXYLYMEYMDILVENIPRLLMVRGYRKDVVTLFT
D5A9L5_________________LDLLDAPSWRPRWKFHHWSLSLIGAMLCIVIMFLISWTFTIVSLALASLLYYYVCLKGKAGDWGDGFKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYNEKAEEAKVACRQLGAYIDYKNCEGVAEIIVAENMQEGFRGIVQTMGLGNLKPNIVVMRYPEIWRQENSKEISETFVSIINDCIVANKAVVTVKGLDEWPGEYQKQFGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDTEAEELKTDVKKFLYDLRMQAEVIVITMKSWEAHREDQGLETGREDAMEAFSRARKRIVLQAADMKRKMNAEGGSTSVNEHQVNKFLYTTLKLNATILRYSRMAAVVLVSLPPPPPNHPPYFYMEYMDLLVENIPRLLMVRGYRKDVVTLFT

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
433	25		75		0.996473
435	25	75			0.996473
436			75	25	0.996473
437	75			25	0.996473
534	75	25			0.996473
614	75		25		0.996473
638	25		75		0.996473
642		75		25	0.996473
913	20			80	0.995493
914	20	80			0.995493
1081	20		80		0.995493
1082	80	20			0.995493
1085			80	20	0.995493
1201	25			75	0.996473
1202	75	25			0.996473
1203	25		75		0.996473
1258		33		66	0.997452
1259	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1204	1218	CCA CCA CCA CCA CCA	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain