SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9126

Length: 240 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9126
AATGTCATCATCAAGGCTATCATGCTCTTCAAGGTCTCAGGCTGCACTGTGGGCAAGTAATAATAAATCGACATCTCTTTGGAATTTGTTTAGCATTCCCAAAATTCCTTGGGGATCAGATATTGCCAAAGATGATCAGATTAAAATACTTGCAGCAGAAGTGGAATCTCTCCGAGGAGAAATTGCTAGTGCTGATGAGCGAGAAACAACTCTTCATGCCCAGTTGGGACATCTTGATGA

Ace file of the UniGene biog3_v1.0_unigene9126 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene458	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] ref\|NP_001078437.1\| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] gb\|AEE84821.1\| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	pleckstrin homology domain-containing protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	pyrimidine ribonucleoside triphosphate biosynthetic process	GO:0009209	Biological Process	0.0	74%
Blast2go	pyrimidine ribonucleoside metabolic process	GO:0046131	Biological Process	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA32

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 79 - 365

Fln protein: MSSSRLSCSSRSQAALWASNNKSTSLWNLFSIPKIPWGSDIAKDDQIKILAAEVESLRGEIASADERETTLHAQLGHLD

Protein Length: 80

Fln nts: AATGTCATCATCAAGGCTATCATGCTCTTCAAGGTCTCAGGCTGCACTGTGGGCAAGTAATAATAAATCGACATCTCTTTGGAATTTGTTTAGCATTCCCAAAATTCCTTGGGGATCAGATATTGCCAAAGATGATCAGATTAAAATACTTGCAGCAGAAGTGGAATCTCTCCGAGGAGAAATTGCTAGTGCTGATGAGCGAGAAACAACTCTTCATGCCCAGTTGGGACATCTTGATGA

Fln Alignment:

Contig9126___AALWASNNKSTSLWNLFSIPKIPWGSDIAKDDQIKILAAEVESLRGEIASADERETTLHAQLGHLD
D5AA32_________________AGLWARNNKPTSLWNLFSIPKIPWGSDIAKDDQIKILAAEVESLRGEIASADERETNLHAQLGHLD

SNPs (tot: 3)

Position	A %	C %	T %	Probability
67		50	50	1.0
183	33		66	0.997452
184		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain