SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9124

Length: 467 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9124
ACAACATTTGCATGCTATAGAAATTGGTTTTGCTGACGAAGAATCTAGCAGTACAGTAACAGCTGAGAAGATCTTTCCTGCAATTGATTGCTTCAGTAAGACATCATTGCATATTGAAACTGTGGAGGAAGATCCAGCTGGTTGCAGCAGGTCAATGGATGATAACATGCCGGGCGTGGGTGATTCTGGACTATCCTTTCTTGATAAGGACATTAAGTGCGGCCCTTTGTTTAATACCTCATGCCTTGCAAGGCTATATTTTGTTATGCTCCCAGATTCTTAATGGAGGGTTATGTGATAAGCCTGGAAAGTCCCGTGATTATTATCATACTTGCTATTGCCTTAGTGGTTTGTCCACTGCTCAGTACAGCTGGTCACATCGAACTGGGACTCCACCCCCTCCTCGTGCAGTACTGGGTCCATATACTAATTTGCTGGATCCAGTGCATCCTCTCTACAATGACATT

Ace file of the UniGene biog3_v1.0_unigene9124 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22369	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	farnesyl-protein transferase beta subunit [Solanum lycopersicum]	-	-	5.0e-34	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	protein farnesyltransferase subunit beta-like isoform 1	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Prenyltransferase/squalene oxidase	IPR001330	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYH3

Fln msg: Overlapping hits, possible frame ERROR between 247 and 198, STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 156 - 491

Fln protein: QHLHAIEIGFADEESSSTVTAEKIFPAIDCFSKTSLHIETVEEDPAGCSRSMDDNMPGVGDSGLSxxxxxxxxxxxxxxxxxxQGYILLCSQILNGGLCDKPGKSRDYYHTCYCLSGLSTAQYSWSHRTGTPPPPRAVLGPYTNLLDPVHPLYNDI

Protein Length: 157

Fln nts: ACAACATTTGCATGCTATAGAAATTGGTTTTGCTGACGAAGAATCTAGCAGTACAGTAACAGCTGAGAAGATCTTTCCTGCAATTGATTGCTTCAGTAAGACATCATTGCATATTGAAACTGTGGAGGAAGATCCAGCTGGTTGCAGCAGGTCAATGGATGATAACATGCCGGGCGTGGGTGATTCTGGACTATCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAAGGCTATATTTTGTTATGCTCCCAGATTCTTAATGGAGGGTTATGTGATAAGCCTGGAAAGTCCCGTGATTATTATCATACTTGCTATTGCCTTAGTGGTTTGTCCACTGCTCAGTACAGCTGGTCACATCGAACTGGGACTCCACCCCCTCCTCGTGCAGTACTGGGTCCATATACTAATTTGCTGGATCCAGTGCATCCTCTCTACAATGACATT

Fln Alignment:

Contig9124___QHLHAIEIGFADEESSSTVTAEKIFPAIDCFSKTSLHIETVEEDPAGCSRSMDDNMPGVGDSGLSxxxxxxxxxxxxxxxxxQGYILLCSQILNGGLCDKPGKSRDYYHTCYCLSGLSTAQYSWSHRTGTPPPPRAVLGPYTNLLDPVHPLYN
A9NYH3_________________QQLHAIETGFIDEESSSTVTAENIFPAIDCFRKTSLHIETVEEDPAGRSRSMNDNMPGVGDSGLSxxxxxxxxxxxxxxxxxQGYILLCSQVLDGGLRDKPGKSRDHYHTCYCLSGLSTAQYSWSCRTGTPPSPSAVLGPYTNLLDPVHPLYN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain