SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9116

Length: 860 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9116 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9240	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	nucleobase-ascorbate transporter 12 [Arabidopsis thaliana] sp\|Q3E7D0.3\|NAT12_ARATH RecName: Full=Nucleobase-ascorbate transporter 12; Short=AtNAT12 gb\|AAM20397.1\| putative membrane transporter [Arabidopsis thaliana] gb\|AAN72132.1\| putative membrane transp	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	nucleobase ascorbate transporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	transmembrane transporter activity	GO:0022857	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	0.0	-
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 120 aas, your sequence is shorter than subject: 286 - 524

Fln protein: NYRFHFPDDLGL*WSNVTFSQVDKPRCCCTNCSSSRFSIFSYGFPQVGTCVEISIPQLLLVILFALYLRKISIFGHRIFQVYAVPLGLGITWAYAFLLTEAGAYNYKGCDPSVPISNIVSEACRKHVFTMNHCRTDASKAWRTASWVRVPYPFQWGTPTFHWRTAIVMCAVSVIASVDSVGSYHATSLLVASKAPPPGVVSRGIGLEGLTSILAGLWGMGTGATTLTENVHTIAVTKMGSRRAVELGAGLLILISLVGKVGAILATFHQPWLLLFYVLCGLCLRHT

Protein Length: 287

Fln nts: AATTATAGGTTCCACTTTCCAGATGATCTTGGGCTATAGTGGTCTAATGTCACTTTTTCTCAGGTTGATAAACCCCGTTGTTGTTGCACCAACTGTAGCAGCAGTAGGTTTAGCATTTTCAGCTATGGTTTTCCTCAAGTTGGTACTTGTGTGGAAATTAGCATCCCCCAGCTTTTGCTAGTCATCCTTTTTGCTTTGTATCTACGCAAGATTTCCATTTTTGGCCATCGGATATTTCAAGTTTATGCGGTTCCACTGGGCCTTGGGATCACTTGGGCATATGCTTTTCTTCTAACAGAGGCTGGAGCTTATAATTACAAAGGGTGTGATCCAAGTGTACCCATTTCAAATATTGTGTCAGAGGCTTGCAGGAAGCATGTATTTACAATGAACCACTGTCGTACAGATGCTTCAAAAGCATGGAGAACAGCGTCGTGGGTTCGAGTTCCATATCCTTTTCAGTGGGGCACTCCAACCTTCCATTGGAGGACAGCAATTGTAATGTGTGCTGTGTCTGTAATTGCATCTGTGGATTCGGTTGGTTCATATCATGCAACATCGCTTTTAGTCGCATCGAAGGCACCACCACCTGGGGTTGTGAGTAGAGGAATTGGTTTGGAAGGCTTGACAAGCATCTTGGCAGGACTTTGGGGTATGGGCACAGGTGCAACAACTCTCACTGAAAATGTCCATACCATTGCTGTTACAAAGATGGGAAGTAGAAGGGCTGTGGAACTTGGTGCTGGATTGTTAATCCTCATTTCACTTGTTGGCAAAGTGGGAGCCATTTTAGCTACATTCCACCAGCCATGGTTGCTGCTCTTCTATGTTTTATGTGGGCTATGCTTGCGGCATACATT

Fln Alignment:

Contig9116___IFSYGFPQVGTCVEISIPQLLLVILFALYLRKISIFGHRIFQVYAVPLGLGITWAYAFLLTEAGAYNYKGCDPSVPISNIVSEACRKHV--FTMNHCRTDASKAWRTASWVRVPYPFQWGTPTFHWRTAIVMCAVSVIASVDSVGSYHATSLLVASKAPPPGVVSRGIGLEGLTSILAGLWGMGTGATTLTENVHTIAVTKMGSRRAVELGAGLLILISLVGKVGAILATFHQP
B8LQ21_________________LFERGFPGVGKCVEIGLPMLIIFVGFAQYLKHIQARDLPVFERFPVLICITLVWAYAHLLTASGAY--------------------KHVPERTKINCRTDRAHLISSAPWIKLPYPLQWGAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFP

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
85	25			75	0.996473
86	25			75	0.996473
89		75		25	0.996473
294	33		66		0.997452
529	25	75			0.996473
533			75	25	0.996473
668	80			20	0.995493
669	80			20	0.995493
695	25		75		0.996473
696		25	75		0.996473
697	25		75		0.996473
698			75	25	0.996473
699	20		60	20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain