SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9113

Length: 273 nt

UniGene Fasta

>biog3_v1.0_unigene9113
TGAAAGGGCTTGTGCTATGGCTGGGTTGCATGTTCTTCGCTTGATGCCAGAAAATGTAGCAGTAGCCCTGCTTTATGCTCAGCAGCAACAGATGACATCTCAGGCTACTATGGGGAGTGGTACTGAGAAGCTCGCATTGATTTTCAATATGGGTGGTGGATACTGTGATGTTGCTGTCACTGCCACAGCCGGTGGGGTTTCTCAGATTAAAGCTCTTGCAGGGGATGCAATTGGAGGCGAGGATATCTTACAAAATGTTATCCAGCATACATT

Ace file of the UniGene biog3_v1.0_unigene9113

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17923	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	heat-shock protein 70T-2 [Arabidopsis thaliana] ref\|NP_850183.1\| heat-shock protein 70T-2 [Arabidopsis thaliana] gb\|AAD15393.1\| 70kD heat shock protein [Arabidopsis thaliana] gb\|AAM74502.1\| At2g32120/F22D22.13 [Arabidopsis thaliana] gb\|AAN46859.1\| At2g321	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	heat-shock protein 70t-2	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	response to high light intensity	GO:0009644	Biological Process	75%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	75%
Blast2go	response to heat	GO:0009408	Biological Process	75%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp70	IPR001023	-	-
Sma3	Heat shock protein 70	IPR013126	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXU2

Fln msg: Distance to subject end: 404 aas, your sequence is shorter than subject: 90 - 651

Fln protein: ERACAMAGLHVLRLMPENVAVALLYAQQQQMTSQATMGSGTEKLALIFNMGGGYCDVAVTATAGGVSQIKALAGDAIGGEDILQNVIQHT

Protein Length: 91

Fln nts: TGAAAGGGCTTGTGCTATGGCTGGGTTGCATGTTCTTCGCTTGATGCCAGAAAATGTAGCAGTAGCCCTGCTTTATGCTCAGCAGCAACAGATGACATCTCAGGCTACTATGGGGAGTGGTACTGAGAAGCTCGCATTGATTTTCAATATGGGTGGTGGATACTGTGATGTTGCTGTCACTGCCACAGCCGGTGGGGTTTCTCAGATTAAAGCTCTTGCAGGGGATGCAATTGGAGGCGAGGATATCTTACAAAATGTTATCCAGCATACATT

Fln Alignment:

Contig9113___MAGLHVLRLMPENVAVALLYXXXXXXXXXXXXXXGTEKLALIFNMGGGYCDVAVTATAGGVSQIKALAGDA-IGGEDILQNVIQH
A9NXU2_________________IAGLNVLRIINEPTAAAIAYGLDKKATSTK------EKNVLIFDLGGGTFDVSILTIEEGIFEVKATAGDTHLGGEDFDNRMVNH

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
53	75	25			0.996473
54	75	25			0.996473
55		25		75	0.996473
56	25		75		0.996473
57		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain