SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9112

Length: 1045 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9112

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene585	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	phosphate transporter 3;3 [Arabidopsis thaliana] gb\|AAQ22668.1\| At2g17270 [Arabidopsis thaliana] dbj\|BAE99316.1\| putative mitochondrial phosphate translocator protein [Arabidopsis thaliana] gb\|AEC06606.1\| phosphate transporter 3;3 [Arabidopsis thaliana]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	mitochondrial phosphate carrier protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	81%
Blast2go	binding	GO:0005488	Molecular Function	81%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3		IPR001993	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Pyruvate phosphate dikinase, PEP/pyruvate-binding	IPR002192	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEA2

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MDVRKQSGSECFSPRYYAACAVGGMFSAGTTHLLTTPLDMLKVNMQVNPAKYRNIWSGLGVILREQGPAGLWKGWGGKLFGYGVQGGCRFGLYEYFKKFYCDAAGPDKVKHQKTLIFLASSASAQLIADVALCPFEAVKVQVQTQPRFAKGLVDGFPKLYSTEGCSGFYKGIVPLWCRNLPFSMMMFSTFEHTVDFLYQNVVQKQKAECSIMQQLGVTCMAGYMSGTVGTVLATPADNIVSCLYNKKANTIIQAVKNIGAVNLFTRSLPIRVALVGPVITMQWFSYDMIKVLSGLPTSGGIDYYNE*

Protein Length: 308

Fln nts: AATGTCACCCTCCATGCTGAATCTGGATTGTTTCTGATCCATGTAGCAGAATTTTGGTTGGCTGAGCAGAAGCAAGCGGTGAGGTATCTGACAGTGCGAGAATATGATTTATCAGTGTATAT_-_ATGGATGTTCGGAAGCAGAGCGGATCAGAATGTTTCAGCCCCAGATATTATGCCGCTTGTGCTGTTGGTGGAATGTTTAGTGCTGGCACCACGCACCTTCTCACCACTCCATTAGACATGCTGAAAGTCAATATGCAGGTTAATCCTGCTAAATACAGAAACATTTGGTCTGGGCTTGGTGTTATATTGAGGGAACAAGGTCCAGCTGGCCTATGGAAAGGCTGGGGAGGGAAGCTTTTTGGCTATGGTGTCCAAGGTGGCTGCAGGTTTGGCTTGTATGAGTACTTCAAGAAATTTTACTGTGATGCTGCTGGCCCAGATAAAGTCAAGCATCAGAAAACTCTAATCTTCCTTGCATCCAGTGCTTCTGCACAGCTAATTGCTGATGTTGCTCTATGTCCCTTTGAAGCTGTGAAAGTTCAAGTTCAGACACAGCCTAGATTTGCTAAGGGCTTGGTTGATGGATTCCCAAAGCTCTACTCAACTGAAGGCTGTTCAGGGTTTTACAAAGGAATTGTACCTTTGTGGTGTCGGAACCTTCCATTTTCTATGATGATGTTCTCAACATTTGAACACACAGTCGATTTCCTATACCAAAATGTTGTGCAAAAGCAAAAGGCTGAATGTTCAATAATGCAACAATTGGGAGTAACATGCATGGCTGGGTACATGTCCGGTACTGTTGGTACTGTCCTTGCAACTCCTGCTGATAATATTGTTTCATGCTTGTATAACAAAAAGGCAAATACAATTATTCAGGCTGTAAAGAACATCGGAGCAGTTAATTTGTTCACCAGAAGTCTCCCAATCCGTGTTGCCCTTGTTGGGCCTGTTATCACAATGCAGTGGTTTTCCTATGACATGATAAAGGTCTTAAGTGGATTGCCAACAAGCGGAGGCATTGACTACTATAATGAATAACC

Fln Alignment:

Contig9112___FSPRYYAACAVGGMFSAGTTHLLTTPLDMLKVNMQVNPAKYRNIWSGLGVILREQGPAXXXXXXXXXXXXXXVQGGCRFGLYEYFKKFYCDAAGPDKVKHQKTLIFLASSASAQLIADVALCPFEAVKVQVQTQPRFAKGLVDGFPKLYSTEGCSGFYKGIVPLWCRNLPFSMMMFSTFEHTVDFLYQNVVQKQKAECSIMQQLGVTCMAGYMSGTVGTVLATPADNIVSCLYNKKANTIIQAVKNIGAVNLFTRSLPIRVALVGPVITMQWFSYDMIKVLSGLPTSGGIDYYNE
D5AEA2_________________FSPRYYAACAVGGMFSAGTTHLLITPLDMLKVNMQVNPAKYRNIWSGLGVILREQGPAGLWKGWGGKLFGYGVQGGCRFGLYEYFKKFYCDAAGPDKVKHQKTLIYLASSASAQLIADVALCPFEAVKVQVQTQPRFAKGLVDGFPKLYSTEGCTGFYKGIVPLWCRNLPFSMMMFSTFEHTADFLYQNVAQKQKTECSIMQQLGVTCTAGYMAGTVGTVLATPADNIVSCLYNKKADTILQAVKNIGAVNLFTRSLPIRIALVGPVITMQWFSYDMIKVLSGLPTSGGIDYYNE

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
352	33		66		0.997452
353			66	33	0.997452
355	66			33	0.997452
395	25		75		0.996473
396	25	75			0.996473
458	16	83			0.994512
462	83			16	0.994512
541	83	16			0.994512
554	11		88		0.923564
556		88		11	0.923564
557	88		11		0.923564
558		88		11	0.923564
562	11	88			0.923564
564	88			11	0.923564
670	20			80	0.995493
671		20		80	0.995493
672	20			80	0.995493
673		80		20	0.995493
713	25	75			0.996473
714	25	75			0.996473
716	75		25		0.996473
801	14		85		0.993533
802			85	14	0.993533
874	25	75			0.996473
875	75	25			0.996473
937	33		66		0.997452
938		33		66	0.997452
939	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain