SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9107

Length: 494 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9107
AATGTAAAAGATGTCTTTGAAGCATTCTATAAAAAAGATCTTGCTAAAAAGACTGCTTTTAGGAAAAAGTGCATCCATTGATGCAGAGAAGTCAATGATTTCTAAGCTGAAGACAGAGTGTGGAAGCCAGTTCACAAATAAACTTGAAGGAATGTTCAAGGACATTGAATTATCAAAGGAGATCAACGAGTCATTCAAACAGTCATCACAGGCAAGGACGAAGCTTCCTCAGGAATTGAAATGAGTGTGCATGTTTAACAACTGGGTACTGGCCAACATATCCACCCATGGAAGTAAGACTTCCTCATGAGCTCAATGTATATCAAGGATGCAACTGGTATAGAAGACAAAGAACTACGGAGGACTTTGCAGTCACTTGCCTGTGGAAAAGTGAGGGTTCTTCAAAAGCAACCAAAGGGAAGAGACGTTGAGGACGAGGACCAGTTTGTATTTAATGATGATTTTAATGCTCCTCTTTTCCGGATAAAGACATT

Ace file of the UniGene biog3_v1.0_unigene9107 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17875	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	cullin 4 [Arabidopsis thaliana]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	ubiquitin-protein cullin 4	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	89%
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	89%
Blast2go	protein polyubiquitination	GO:0000209	Biological Process	89%
Blast2go	flower development	GO:0009908	Biological Process	89%
Blast2go	hormone-mediated signaling pathway	GO:0009755	Biological Process	89%
Blast2go	leaf development	GO:0048366	Biological Process	89%
Blast2go	cotyledon development	GO:0048825	Biological Process	89%
Blast2go	short-day photoperiodism, flowering	GO:0048575	Biological Process	89%
Blast2go	sugar mediated signaling pathway	GO:0010182	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNS8

Fln msg: Separated hits, possible frame ERROR between 51 and 80, and possible frame ERROR between 196 and 255, Unexpected STOP codon at 3' end. Distance to subject end: 92 aas, your sequence is shorter than subject: 153 - 735

Fln protein: NVKDVFEAFYKKDLAKxxxxxxxxxxxDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESxxxxxxxxxxxxxxxxxxxxCLTTGYWPTYPPMEVRLPHELNVYQGCNWYRRQRTTEDFAVTCLWKSEGSSKATKGKRR*GRGPVCI*

Protein Length: 154

Fln nts: AATGTAAAAGATGTCTTTGAAGCATTCTATAAAAAAGATCTTGCTAAAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGATGCAGAGAAGTCAATGATTTCTAAGCTGAAGACAGAGTGTGGAAGCCAGTTCACAAATAAACTTGAAGGAATGTTCAAGGACATTGAATTATCAAAGGAGATCAACGAGTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTTTAACAACTGGGTACTGGCCAACATATCCACCCATGGAAGTAAGACTTCCTCATGAGCTCAATGTATATCAAGGATGCAACTGGTATAGAAGACAAAGAACTACGGAGGACTTTGCAGTCACTTGCCTGTGGAAAAGTGAGGGTTCTTCAAAAGCAACCAAAGGGAAGAGACGTTGAGGACGAGGACCAGTTTGTATTTAATGATGATTTTAATGCTCCTCTTTTCCGGATAAAGACATT

Fln Alignment:

Contig9107___KDVFEAFYKKDLAKKxxxxxxxxxxDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFxxxxxxxxxxxxxxxxxxxxLTTGYWPTYPPMEVRLPHEL
B8LNS8_________________KDVFEKYYKQHLAKRxxxxxxxxxxDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSRDTMQGFxxxxxxxxxxxxxxxxxxxxLTTGSWPTQTGARCNLPKEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain