SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9101

Length: 1760 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9101

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26735	179/184
SustainPine v2.0	sp_v2.0_unigene63751	2/184
SustainPine v2.0	sp_v2.0_unigene77405	2/184
SustainPine v2.0	sp_v2.0_unigene78625	1/184

Source	Descriptions	Term	Type	Identity
AutoFact	Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SNV8_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	probable adp-ribosylation factor gtpase-activating protein agd8-like	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Tetrahaem cytochrome domain	IPR012286	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S4

Fln msg:

Fln protein: MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDGGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLHDASQSNHVTNGDSNGKSSNLATDFFFNDEIDAPQVVPSKAEVGLPPPAIASTVKKPLVAKRIVGNKTGGLGVKKLTTKPKEDLYDQKPEEPASISIPSSASTAVQDASRPSRFTYMENNSNSNSNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKSSSRSPQVEESNEARQKFANAKSISSSQFFGENKNAVDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDMTASELITRISLQASQDLSTLKNIAGETGKKLSSFASSFIADF*

Protein Length: 408

Fln nts: GATATAAATCGTTACAGAATAGCCCAGCAATATTCGAGGAGGGCATGCATGAAGAAGGCATTGCTCTGCTCGAACACATAGTAGTCTGATCTCTGCGCTTCGAGCACTACGAGAATTGCTTCACCATTACCTTCATCATCCACCA_-_ATGGCGGCCGAAGATTTTAATGACAAGAATGCTGTATTCAGAAAGCTCCGGGCCAAGCCCGACAACAAGATGTGTTTTGACTGTAATACAAGGAATCCCACATGGGCATCGGTCACTTACGGGGTTTTCATCTGCCTGGATTGTTCTGCATCTCATCGTAGTCTTGGCGTTCACATTAGCTTTGTCAGATCTGTAAACCTGGACTCATGGACTCCTGAACAGTTGAAGGTCATGAGCTTTGGTGGCAATGGCCGAGGACATACATTCTTCAAGCAGCATGGTTGGAATGATGGAGGTAAAATAGAATCGAAATACACATCAAGAGCAGCTGAGCTATATAGACAGCTTCTTGCAAAGGAAGTTGCTAGAAGCTTGACAAATGGAACAAGTCAGACACCATCCTCATTGCATGATGCTTCACAATCAAACCATGTGACTAATGGAGACTCTAATGGAAAGAGTTCAAATTTAGCAACTGATTTTTTCTTCAACGATGAAATTGATGCACCTCAAGTAGTTCCTTCTAAAGCTGAAGTAGGTCTTCCACCTCCAGCTATTGCAAGTACAGTTAAAAAACCACTGGTAGCTAAGAGAATTGTTGGAAATAAAACTGGTGGGCTTGGTGTCAAAAAGCTTACAACTAAGCCAAAGGAGGATCTTTATGATCAAAAGCCAGAAGAACCTGCATCTATTAGCATTCCTTCAAGTGCATCTACAGCAGTACAGGATGCCTCTCGCCCTTCTCGGTTCACATACATGGAGAATAACTCCAATTCAAACTCAAATGGTGGAGCACACATCTCTGGTCATGTTCCTCCTCCTGCAGCTGCCAATTTTTTTGATGATTTTGGATTAAGTGCGGGAAATCAAAAGAAAAAGAGCTCAAGCCGCTCTCCACAGGTTGAGGAAAGTAATGAGGCAAGGCAGAAATTTGCAAATGCCAAGTCAATATCATCTTCGCAATTCTTTGGCGAGAACAAGAATGCAGTCGATACAGAAACTCATGTCCGCTTGCAGAAGTTTTCTGGGTCGTCGGGCATATCAAGCAACGAGCTTTTTGGACATGATGAGTATGATTCTCCTCTGGACATGACAGCAAGTGAACTTATTACAAGGATTTCATTGCAGGCATCTCAGGACTTATCAACCCTAAAGAACATAGCTGGTGAGACTGGGAAGAAGCTATCTTCATTTGCTTCGAGCTTTATTGCAGATTTTTAG___GGTAGCATCGTATGATCAACATATTTCGAGATTTCTGGGTGTGACCATGAATGCAAGTTTGTGATAAGTAGTCAGTCTTGGGCTATGCTATTTTCATTCTTTGTTTTATTTGTTGTACTGGTTGGCCGGGAGATTCTTAAGTTGGCATCTAGAAATTTTCAAAATGTTGGTTTATTTATTCATTCTTTTGCACTTTCAACTTGCTGCTTTGGATAGCGTCAACGGTGCTGTAAGGCCTCGTTTTATGTAGAAGTAGTTACATTATCGTGCAATATATGTTTTTCACTGTTCAGTTGCGATTCTAATTGGTGGCTATTTTTGCAACAACATACCGTGGTTTTCTCAAGGATAAAGTTTATACAGTAGCAGAATTGGTTAACATTATATCTACATT

Fln Alignment:

Contig9101___MAAEDFNDKNAVFRKLRAKPDNKMCFDCNTRNPTWASVTYGVFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDGGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLHDASQSNHVTNGDSNGKSSNLATDFFFNDEIDAPQVVPSKAEVGLPPPAIASTVKKPLVAKRIVGNKTGGLGVKKLTTKPKEDLYDQKXXXXXXXXXXXXXXTAVQDASRPSRFTYMEXXXXXXXXGGAHISGHVPPPAAANFFDDFGLSAGNQKKKSSSRSPQVEESNEARQKFANAKSISSSQFFGENKNAVDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDMTASELITRISLQASQDLSTLKNIAGETGKKL
D5A9S4_________________MAAEDFSDKNAVFRKLRAKPENKMCFDCSTRNPTWASVTYGIFICLDCSASHRSLGVHISFVRSVNLDSWTPEQLKVMSFGGNGRGHTFFKQHGWNDEGKIESKYTSRAAELYRQLLAKEVARSLTNGTSQTPSSLPDASQTNHVTNGDSNGKSSNLGTDFFFNDEIDAPQAVSSKAQVGLPPPAIASTGKKPLVSKRIVGNKTGGLGVKKLTTKPKENLYDQKPEEPASTSIPSSASTAIHDASRPSRFTYMENNSNADSNGGAHISGHVPPPAAANFFDDFGLSAGNQKKKNSSRSPQIEESNEARQKFANAKSISSSQFFGEHKNALDTETHVRLQKFSGSSGISSNELFGHDEYDSPLDLTASELITRISLQASQDLSTLKNIAGETGKKL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1670		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain