SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9073

Length: 1411 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9073

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17297	5/57
SustainPine v2.0	sp_v2.0_unigene26076	2/57
SustainPine v2.0	sp_v2.0_unigene31024	49/57

Source	Descriptions	Term	Type	Identity
AutoFact	hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] emb\|CAB38214.1\| putative protein [Arabidopsis thaliana] emb\|CAB80412.1\| putative protein [Arabidopsis thaliana] gb\|AAL07039.1\| unknown protein [Arabidopsis thaliana] gb\|AAM14286.1\| unknown p	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	sigma factor sigb regulation protein rsbq	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	de-etiolation	GO:0009704	Biological Process	89%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	89%
Blast2go	response to karrikin	GO:0080167	Biological Process	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRQ6

Fln msg:

Fln protein: MYLTNAHNVHVLGSGHELIVLAHGFGTDQSVWKHVVPILEGRYRLVMFDNMGAGTTNPEFFDFERYSTLYGYAYDLLAILEELQVDSCIFVGHSVSGLVGMLASIERPDLFSKIIAISASPRYLNDIDYFGGFEQEDLNQLFEAMQSNFKAWVSGFAPLAVGADLDSIAVQEFSRTLFNVRPDIALSVAKTIFQSDMRSLLPHVTVPCHILQSSKDLAVPVAVAEYIHQNLGGKSIVEILPSEGHLPQLSSPAIVLPVLLRHIEGYI*

Protein Length: 269

Fln nts: GGATCTCCTCGCTAATATTGAGATCCTGTCCGGAGGTGGGAGCAGGTGATGAGTCAACCTGTCGTCTATCTTGTTCTCTGCGTGGCCATGTATCAGTCAGTCATCTTCGCTATGAGGTCGTCCAGCCCATAATATCTCACAGGTTCGAGAAAGATAAGCCTTCCCTGCACTTCAATCTTGATGGTGGTTGTCTATAGTTTTGGGACCTGCTTCTAAAGGAAAA_-_ATGTATTTAACAAATGCTCACAATGTTCATGTACTGGGATCCGGTCATGAGCTCATTGTATTGGCTCATGGATTTGGAACAGACCAGTCTGTGTGGAAGCACGTGGTTCCAATTCTTGAAGGCAGATACAGGCTCGTCATGTTTGACAACATGGGTGCAGGGACGACCAATCCGGAGTTCTTTGATTTTGAGCGATATTCGACTCTTTATGGCTATGCTTATGATCTGCTCGCCATTCTTGAAGAGCTTCAAGTGGATTCCTGCATCTTCGTGGGGCATTCGGTCTCTGGACTGGTTGGCATGTTGGCTTCCATTGAAAGACCGGATCTATTTTCCAAGATAATCGCAATTTCAGCATCTCCTAGATATCTAAATGATATAGATTATTTTGGAGGATTTGAACAGGAAGATTTGAACCAACTTTTTGAGGCAATGCAATCAAACTTTAAGGCTTGGGTCTCAGGATTTGCACCGTTAGCTGTTGGTGCTGATTTAGACTCCATTGCTGTCCAAGAATTCAGTCGAACTTTGTTCAATGTTAGACCTGATATTGCACTGAGTGTTGCAAAGACAATTTTCCAGAGTGACATGCGGAGCCTGCTGCCTCATGTTACTGTGCCCTGTCACATTCTGCAGAGCAGCAAGGATTTAGCAGTGCCTGTTGCTGTTGCCGAGTATATACATCAGAATTTGGGAGGCAAGTCGATTGTTGAGATTTTACCTTCAGAAGGGCACTTGCCTCAGTTGAGCTCTCCAGCTATAGTGCTTCCTGTTCTTTTACGTCATATTGAAGGATACATCTAG___CAGATAACCACTGCTGGGTTTGGCGGGCAGGTCTGCTGAAATTATATTGCTTATGGATTGAGCAATAAAGAGGCTGTGAGCCTGCTACCCACCTAATTTATCAGCCTTGAAGAATAATTATTTCTTTGCATTTGAGATTCTTTTTCTAGTGCCTCAAATTGTAATTTTGCAAGATAATAATGAGGAAATTATATTGTAAACTCAATGGTGGAGAATGCAGACAATTTGGTTGCTCTGGAATACTTGTATGAATCCTGTGATTTCTCAACTCTGATTCTTCCATATATTTTGAAGGGTTGCATGATACATATTATTTTGTGAATATGTTCATGGGAATTGCTCAAATGACATTCTACGCTTGACATTCAGGGTTACAACGGAAAC

Fln Alignment:

Contig9073___MYLTNAHNVHVLGSGHELIVLAHGFGTDQSVWKHVVPILEGRYRLVMFDNMGAGTTNPEFFDFERYSTLYGYAYDLLAILEELQVDSCIFVGHSVSGLVGMLASIERPDLFSKIIAISASPRYLNDIDYFGGFEQEDLNQLFEAMQSNFKAWVSGFAPLAVGADLDSIAVQEFSRTLFNVRPDIALSVAKTIFQSDMRSLLPHVTVPCHILQSSKDLAVPVAVAEYIHQNLGGKSIVEILPSEGHLPQLSSPAIVLPVLLRHIEGYI
B8LRQ6_________________MYLTNAHNVHVLGSGHELIVLAHGFGTDQSVWKHVVPNLENSYRLIMFDNMGAGTTNPDFFDFERYSTLHGYAYDLLAILEELHVDTCIFVGHSVSGLVGILASIERPDLFSKIITISASPRYLNDIDYFGGFEQEDLNQLFEAMQSNFKAWVSGFAPLAVGADLDSMAVQEFSRTLFNVRPDIALSVAKTIFQSDMRSMLPHVTVPCHILQSSKDLAVPVTVADYIHQNLGAKSIVEILPSEGHLPQLSSPAIVIPVLLRHIEGYI

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
593		90	10		0.90298
746	14	85			0.999981
747		14	85		0.999981
749	85			14	0.999981
750		85		14	0.999981
981	16	83			0.994512
982		16		83	0.994512
985	83			16	0.994512
1000	25			75	0.996473
1034	25			75	0.996473
1035	75	25			0.996473
1036	75			25	0.996473
1037		75	25		0.996473
1038		75	25		0.996473
1257	16		83		0.994512
1258	16		83		0.994512
1263		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain