SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9070

Length: 381 nt

UniGene Fasta

>biog3_v1.0_unigene9070
AATGTATTGCTATACTCCACTTGAAGAACTTATATACACATTTGGAGGTCCATGGCTGTTTGGACTTCTCCTCTCTGGTCTACTGGTACTTCTAGCTCTTGTTTTGAGTGTTGCGCGAATGAAATTTGTTGGAAGTGATGACCATTCTGTTCCAACAACTCCTCATGAATCACAAATTCAGCATTCTTTCCCTTTTTTCCAATCTATCGATGAGGTTCGCGAAATTAACCGAGCTGAGGAATCCCAGAGTCATGTTCACAGGATGTATTTTATGGGTCCAAATAAGTTTGGGGAACCATGGCATCTGCCTCACTCACCACCTGATCAAATAACACAGCTTGTGTATGAAGATGCTTTCAACAGATTTGTTGACGAGATTAA

Ace file of the UniGene biog3_v1.0_unigene9070

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9841	2/3

Source	Descriptions	Term	Type	Identity
AutoFact	glycine-rich protein [Arabidopsis thaliana] ref\|NP_001190893.1\| glycine-rich protein [Arabidopsis thaliana] ref\|NP_001190894.1\| glycine-rich protein [Arabidopsis thaliana] gb\|AEE86144.1\| glycine-rich protein [Arabidopsis thaliana] gb\|AEE86145.1\| glycine-r	-	-	57%
FL-Next	tr=Putative uncharacterized protein Sb09g005780; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	76%
Blast2go	uncharacterized protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	membrane	GO:0016020	Cellular Component	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YU95

Fln msg: Distance to subject end: 437 aas, your sequence is shorter than subject: 126 - 1286

Fln protein: MYCYTPLEELIYTFGGPWLFGLLLSGLLVLLALVLSVARMKFVGSDDHSVPTTPHESQIQHSFPFFQSIDEVREINRAEESQSHVHRMYFMGPNKFGEPWHLPHSPPDQITQLVYEDAFNRFVDEI

Protein Length: 127

Fln nts: AATGTATTGCTATACTCCACTTGAAGAACTTATATACACATTTGGAGGTCCATGGCTGTTTGGACTTCTCCTCTCTGGTCTACTGGTACTTCTAGCTCTTGTTTTGAGTGTTGCGCGAATGAAATTTGTTGGAAGTGATGACCATTCTGTTCCAACAACTCCTCATGAATCACAAATTCAGCATTCTTTCCCTTTTTTCCAATCTATCGATGAGGTTCGCGAAATTAACCGAGCTGAGGAATCCCAGAGTCATGTTCACAGGATGTATTTTATGGGTCCAAATAAGTTTGGGGAACCATGGCATCTGCCTCACTCACCACCTGATCAAATAACACAGCTTGTGTATGAAGATGCTTTCAACAGATTTGTTGACGAGATTAA

Fln Alignment:

Contig9070___YCYTPLEELIYTFGGPWLFXXXXXXXXXXXXXXXXXXRMKFVGSDDHSVPT-TPHESQIQHSFPFFQSIDEVREINRAEESQSHVHRMYFMGPNKFGEPWHLPHSPPDQITQLVYEDAFNRFVDEI
C5YU95_________________HCFTALEELIYTFGGPWLFGLLLSGLLVLLALVLSIARMKFVGTDELPGPAPTQHSSQIDHSFPFLESLNEVLETNRAEESHCHVHRMYFMGPNTFSEPWHLPHTPPEQISEIVYEDAFNKFVDEI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
115	25	75			0.996473
116	25		75		0.996473
117		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain