SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9048

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9048
GTTTCTCAGTCTGGCTTATGTGATGGCATGCAAACAATGATATCTATGAGCCAGATGAATATTCCAGCAATAAAAAGAGATATTTGTTCCTCCGTCAGTGCATGGTCCTTTGTATACAGATGGATGGTTTGAAGGTGTTTCATGGAGTTCAGATGAGACTTGTATAGCTTATATTGCAGAGGAACCAGCAACTCCTCAACCTATATTTACCAGTTCTGGGTGCAAGCCAGTAAGTTCAGGTGAAAAGGAGCCAGGAAGTTGGAAAGGTCAAGGAGATTGGTTGGAGGATTGGGGGGAAACCTACTCAGGAAAAAGGAGACCAGCTCTATTTGTTGTCAACATTAAAAGTGGGACTGTGCAACATT

Ace file of the UniGene biog3_v1.0_unigene9048 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1177	2/6
SustainPine v2.0	sp_v2.0_unigene36211	3/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acylamino-acid-releasing enzyme, putative n=1 Tax=Ricinus communis RepID=B9RTG2_RICCO	-	-	3.0e-13	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	66%
Blast2go	acylamino-acid-releasing enzyme	-	-	6.07396e-15	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	6.07396e-15	73%
Blast2go	serine-type aminopeptidase activity	GO:0070009	Molecular Function	6.07396e-15	73%
Blast2go	vacuole	GO:0005773	Cellular Component	6.07396e-15	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	6.07396e-15	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-
Sma3	Peptidase S9, serine active site	IPR002471	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T777

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 539 aas, your sequence is shorter than subject: 121 - 822

Fln protein: FLSLAYVMACKQ*YL*AR*IFQQ*KEIFVPPSVHGPLYTDGWFEGVSWSSDETCIAYIAEEPATPQPIFTSSGCKPVSSGEKEPGSWKGQGDWLEDWGETYSGKRRPALFVVNIKSGTVQH

Protein Length: 122

Fln nts: GTTTCTCAGTCTGGCTTATGTGATGGCATGCAAACAATGATATCTATGAGCCAGATGAATATTCCAGCAATAAAAAGAGATATTTGTTCCTCCGTCAGTGCATGGTCCTTTGTATACAGATGGATGGTTTGAAGGTGTTTCATGGAGTTCAGATGAGACTTGTATAGCTTATATTGCAGAGGAACCAGCAACTCCTCAACCTATATTTACCAGTTCTGGGTGCAAGCCAGTAAGTTCAGGTGAAAAGGAGCCAGGAAGTTGGAAAGGTCAAGGAGATTGGTTGGAGGATTGGGGGGAAACCTACTCAGGAAAAAGGAGACCAGCTCTATTTGTTGTCAACATTAAAAGTGGGACTGTGCAACATT

Fln Alignment:

Contig9048___KEIFVPPSVHGPLYTDGWFEGVSWSSDETCIAYIAEEPATPQPIFTSSGCKPVSSGEKEPGSWKGQGDWLEDWGETYSGKRRPALFVVNIKSGTV
D7T777_________________KEFNVPQSVHGSVYTDGWFEGISWNSDETLIAYVAEEPSPSKPTFGGSGYKKGDSADKESGSWKGLGEWEEHWGETYAGKRQPALFVINIESGEV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
164		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain