SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9040

Length: 207 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9040
AATGTCGTAGGATGTTTTTTGATTGCAGTTTGCTTAGGCGCTGTTGTGCATGCTTCAAATGCAGCTGACAATGAGGCAAAGCTAGAAAGCTTACCTTCCGACTACAAGATGATGCAAAATGTGAGTCGTGATCAGAACCTAAAGAATCAATCCGATGGTAGCACCCTTGACGAGGAGATAGGGGAAAATAACCATTCAGAACACATT

Ace file of the UniGene biog3_v1.0_unigene9040 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13561	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ureide permease 2 [Arabidopsis thaliana] ref\|NP_178451.2\| ureide permease 2 [Arabidopsis thaliana] sp\|Q9ZQ89.2\|UPS2_ARATH RecName: Full=Ureide permease 2; Short=AtUPS2 gb\|AEC05711.1\| ureide permease 2 [Arabidopsis thaliana] gb\|AEC05712.1\| ureide permease	-	-	54%
FL-Next	Isoform 3 of Ureide permease 4 OS=Arabidopsis thaliana GN=UPS4	-	-	73%
Blast2go	ureide permease	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	uracil:cation symporter activity	GO:0015505	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Shikimate kinase	IPR000623	-	-
Sma3	Phosphoserine phosphatase SerB	IPR004469	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IB, PSPase-like	IPR006383	-	-
Sma3	Ureide permease	IPR009834	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9ZQ88-3

Fln msg: STOP codon was not found. Distance to subject end: 29 aas, your sequence is shorter than subject: 69 - 184

Fln protein: NVVGCFLIAVCLGAVVHASNAADNEAKLESLPSDYKMMQNVSRDQNLKNQSDGSTLDEEIGENNHSEHI

Protein Length: 70

Fln nts: AATGTCGTAGGATGTTTTTTGATTGCAGTTTGCTTAGGCGCTGTTGTGCATGCTTCAAATGCAGCTGACAATGAGGCAAAGCTAGAAAGCTTACCTTCCGACTACAAGATGATGCAAAATGTGAGTCGTGATCAGAACCTAAAGAATCAATCCGATGGTAGCACCCTTGACGAGGAGATAGGGGAAAATAACCATTCAGAACACATT

Fln Alignment:

Contig9040___VGCFLIAVCLGAVVHASNAADNEAKLESLPSDYKMMQN
Q9ZQ88-3_______________VGCFLIAVFLGAAVHASNAADVKEKLKSLPSEYKAETN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
29	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain