SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9021

Length: 233 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9021
AATGTCTATGGATTATCGTTGCCGGTCCCATTCCCCACCACATTGCAGTTATAATGGACGGCAATAGGAGGTTCGCCCAGAGGCGAAATCTTCAGAAGAAAAGCGGCCATGAATTCGGAGCCGAAACACTGATACAGACTCTCAAAGACTGTTACGAATTGGGCGTAAAATACGTCACGGTTTATGCTTTCAGTATTGAGAATTTCAAGCGGTCGGCGGAAGAAGTGGACATT

Ace file of the UniGene biog3_v1.0_unigene9021 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16304	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Cis-prenyltransferase n=1 Tax=Periploca sepium RepID=Q8H984_9GENT	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	dehydrodolichyl diphosphate synthase 6	-	-	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like	IPR001441	-	0.0	-
Sma3	Di-trans-poly-cis-decaprenylcistransferase-like, conserved site	IPR018520	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB96

Fln msg: Distance to subject end: 202 aas, your sequence is shorter than subject: 77 - 318

Fln protein: CLWIIVAGPIPHHIAVIMDGNRRFAQRRNLQKKSGHEFGAETLIQTLKDCYELGVKYVTVYAFSIENFKRSAEEVDI

Protein Length: 78

Fln nts: AATGTCTATGGATTATCGTTGCCGGTCCCATTCCCCACCACATTGCAGTTATAATGGACGGCAATAGGAGGTTCGCCCAGAGGCGAAATCTTCAGAAGAAAAGCGGCCATGAATTCGGAGCCGAAACACTGATACAGACTCTCAAAGACTGTTACGAATTGGGCGTAAAATACGTCACGGTTTATGCTTTCAGTATTGAGAATTTCAAGCGGTCGGCGGAAGAAGTGGACATT

Fln Alignment:

Contig9021___LWIIVAGPIPHHIAVIMDGNRRFAQRRNLQKKSGHEFGAETLIQTLKDCYELGVKYVTVYAFSIENFKRSAEEV
D5AB96_________________IWIITAGPIPKHVAIIMDGNRRYAARRQMEKTSGHQFGYDSLMHTLRDCFDLGIKCVSVYAFSIENFKRSKEEV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
22	33	66			0.997452
23		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain