SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8993

Length: 240 nt

UniGene Fasta

>biog3_v1.0_unigene8993
AATGTATTGCTACAAGGCTGCGCTAAGAAGAACGAGGAGGAGGAGATCATCGATGACAGCAATGAAAATGAAGTTGCGAATGGAATCGAAAACAAGGGTAGGAAGGAAAAGAAAAAGGAGCAGAAACAGAGTAAGGACAGTGAAGTGAGCGTTTCTGGGAAAGGAAGTGAAGATGCAAAGTACAGAACCTTGCAATCGTTCGAGGAGGCCGGGCTTCCAGAGAATGTGCTGCAGTGCTGT

Ace file of the UniGene biog3_v1.0_unigene8993

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4713	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 5 n=2 Tax=Oryza sativa RepID=RH5_ORYSJ	-	-	79%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	62%
Blast2go	rna helicase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	88%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	88%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C551

Fln msg: Distance to subject end: 406 aas, your sequence is shorter than subject: 80 - 537

Fln protein: NVLLQGCAKKNEEEEIIDDSNENEVANGIENKGRKEKKKEQKQSKDSEVSVSGKGSEDAKYRTLQSFEEAGLPENVLQCC

Protein Length: 81

Fln nts: AATGTATTGCTACAAGGCTGCGCTAAGAAGAACGAGGAGGAGGAGATCATCGATGACAGCAATGAAAATGAAGTTGCGAATGGAATCGAAAACAAGGGTAGGAAGGAAAAGAAAAAGGAGCAGAAACAGAGTAAGGACAGTGAAGTGAGCGTTTCTGGGAAAGGAAGTGAAGATGCAAAGTACAGAACCTTGCAATCGTTCGAGGAGGCCGGGCTTCCAGAGAATGTGCTGCAGTGCTGT

Fln Alignment:

Contig8993___VSVSGKGSEDAKYRTLQSFEEAGLPENVLQCC
Q9C551_________________VVVTGKGVEEAKYAALKTFAESNLPENVLDCC

SNPs (tot: 3)

Position	A %	C %	T %	Probability
127	20	80		0.995493
128	80		20	0.995493
130	80		20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
34	45	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain