SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8964

Length: 969 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8964 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene293	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	MYND type zinc finger and programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana] gb\|AAK59634.1\| putative zinc finger protein [Arabidopsis thaliana] gb\|AAL07201.1\| putative zinc finger protein [Arabidopsis thaliana] gb\|AEE82142	-	-	47%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	49%
Blast2go	protein	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, MYND-type	IPR002893	-	-
Sma3	Programmed cell death protein 2, C-terminal	IPR007320	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GSD8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 62 aas, your sequence is shorter than subject: 323 - 400

Fln protein: KGR*SNDIGFRTKARKSPFTCSAFFPSKAGGTPAWLDPINIPTVMDSCCGICGNPLQFLIQVYAPIEEKDDAFHRTLSVFMCPSMACLQQDQIEQRKLPMEKASRSVKVFRCQLARENPFYPVDPPKHDGHDAPLSSGVALCSWCGTWRGGKICSGCKMARYCSRQHQVDHWRTGHAADCRQILSISTSVVDVNCLTGNCNSSQVVSADGSQNDYLVKAASTHLWPELEIIDEEEGNMDSEGLDEQVPENAISANQQKDEEFLRQFTGMEASRDQKHWASFQARISRYPDQVLRYTRSKNAKILWPRLEGQPRITDIPKCTLC

Protein Length: 324

Fln nts: AAAGGAAGATGATCGAATGATATTGGGTTTCGTACAAAAGCCAGAAAATCCCCATTCACTTGCTCGGCATTCTTCCCTAGCAAGGCTGGAGGCACACCGGCATGGCTGGATCCAATTAACATACCTACTGTGATGGACTCGTGCTGTGGTATCTGTGGAAATCCTTTGCAATTTTTGATACAGGTTTATGCACCGATCGAAGAGAAAGATGATGCTTTTCATAGAACCTTATCTGTCTTCATGTGCCCTTCAATGGCATGTCTCCAACAGGATCAGATTGAACAGAGAAAGCTTCCTATGGAAAAGGCCAGTAGAAGTGTGAAGGTATTTCGTTGCCAGCTAGCTCGGGAAAATCCTTTCTACCCAGTGGATCCTCCAAAACACGATGGACATGATGCACCATTATCTAGTGGTGTTGCTCTTTGTAGTTGGTGTGGGACATGGAGAGGGGGGAAGATCTGCAGTGGTTGCAAGATGGCGCGGTACTGTTCTCGCCAACATCAGGTCGACCATTGGCGAACAGGTCATGCAGCAGATTGTCGTCAGATTCTATCAATTTCTACATCTGTTGTAGATGTTAATTGTCTTACTGGAAACTGCAACTCATCTCAAGTTGTCAGCGCAGATGGCTCTCAAAATGATTACTTGGTAAAAGCAGCAAGCACACATTTATGGCCCGAGCTAGAGATCATAGATGAAGAAGAGGGCAATATGGATTCTGAAGGGCTTGACGAACAAGTCCCAGAAAATGCAATTTCCGCTAATCAGCAAAAGGATGAAGAATTTCTTAGACAGTTCACGGGTATGGAGGCATCCAGAGATCAAAAACATTGGGCATCCTTTCAAGCTCGTATTTCAAGATATCCAGACCAAGTTCTCAGGTACACTAGGTCCAAGAATGCAAAAATCTTGTGGCCAAGATTAGAAGGGCAGCCACGGATCACTGACATTCCTAAATGTACGTTGTGT

Fln Alignment:

Contig8964___IGFRTKARKSPFTCSAFFPSKAGGTPAWLDPINIPTVMDSCCGICGNPLQFLIQVYAPIEEKDDAFHRTLSVFMCPSMACLQQDQIEQRKLPMEKASRSVKVFRCQLARENPFYPVDPPKHDGHDAPLSSGVALCSWCGTWRGGKICSGCKMARYCSRQHQVDHWRTGHAADCRQILSISTSVVDVNCLTGNCNSSQVVSADGSQNDYLVKAASTHLWPELEIIDEEEGNMDSEGLDEQVPENAISANQQKDEEFLRQFTGMEASRDQKHWASFQARISRYPDQVLRYTRSKNAKILWPRLEGQPRITDIPKCTLC
B9GSD8_________________LGFLEKTKNCWSLLRQVFPSKAGGVPAWLDPVNLPSGRSCVCDICEEPLQFLLQVYAPITEKESTFHRTLFVFMCPSMSCLHRDQHEQWKRSPEKPSRSVKVFRCQLPCSNPFYSSEPPRNDGTDKPSGSGVSLCNWCGTWKGDKVCSGCKRTKYCSHKHQVLHWHSGHKIDCQQ-LSLSV------------DSSSIV--------------SNALWPEYEMINDDENEYDAEMSDDNIPTHSLVSRNKMDSTMNSLLDIFEGNSDKKCWASFQQRIAKAPEQVLRYCRNASAKPLWPLSSGQPSKADIPNCSYC

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
264	25	75			0.996473
266	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain