SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8923

Length: 1506 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8923

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6175	34/40
SustainPine v2.0	sp_v2.0_unigene79419	4/40

Source	Descriptions	Term	Type	Identity
AutoFact	Probable V-type proton ATPase subunit d n=6 Tax=Poaceae RepID=VA0D_ORYSJ	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	v-type proton atpase subunit d2	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	95%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	95%
Blast2go	ATP hydrolysis coupled proton transport	GO:0015991	Biological Process	95%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	95%
Blast2go	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	95%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	95%
Blast2go	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	95%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0 complex, subunit D	IPR016727	-	0.0	-
Sma3	ATPase, V0/A0 complex, subunit C/D	IPR002843	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLZ3

Fln msg:

Fln protein: MYGFEALTFNIHGGYLEAIVRGYRSGLLTTADYNNLSQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMCDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAAMEKYPPYQSIFAKISYGESQMLDKAFYEEEVKRFCLAFEQQFHYGVFFTYVRLREQEIRNLMWVSECVAQNQKARVHDSIVFIF*

Protein Length: 353

Fln nts: AATGTAGACATTGGTACATTTCTCTGCGCACTGTGGGTGAGAGAGCGGATTCCAACCCGATCCAAACACCCATAAACCGATCCGTTCTTGTTGGAGGTTTAAAGGCCTAACAGGTTCAGATCTACTCTATACTAACATTAGTTTTGGAAATCAAAGTAGAAATC_-_ATGTATGGGTTCGAGGCGTTGACATTCAACATCCATGGAGGATACTTGGAGGCAATTGTGCGAGGATACAGGTCGGGCCTCTTGACAACGGCCGATTACAACAATCTAAGCCAGTGCGAGACGCTAGATGACATCAAAATGCACCTCTCCGCCACTGAATATGGCCCTTATTTGCAGAATGAGCCTTCGCCATTGCACACAACCACCATTGTGGAGAAATGTACTTTGAAATTGGTGGATGAATACAAACACATGCTTTCTCAAGCTACTGAGCCACTGTCTACTTTCCTTGAATATATTACTTATGGTCACATGATTGACAACGTAGTTCTCATTGTTACTGGCACGTTGCACGAAAGGGATGTTCAAGAATTGCTAGAAAAATGTCATCCTTTGGGCATGTTCGACAGTATTGCAACGCTTGCAGTTGCCCAGAATATGCGAGAGCTGTATAGACTGGTGCTTGTGGACACACCTTTGGCTCCTTATTTTTCAGAATGCATTACCTCCGAGGATCTTGATGATATGAATATTGAAATTATGCGGAATACACTCTATAAAGCATATCTTGAGGACTTCTATAATTTTTGCAAGAAATTGGGAGGTGCTACTGCAGAAATAATGTGTGATTTGTTGGCATTTGAAGCTGACCGAAGAGCGGTTAACATTACAATAAATAGTATTGGGACAGAGTTGACTCGTGATGATCGGCGGAAGCTTTATTCTAATTTTGGCTTGCTGTACCCTTACGGTCATGAAGAACTTGCCGTCTGTGAGGATATTGATCAGGTCCGTGCGGCTATGGAAAAGTATCCACCATATCAATCAATATTTGCTAAAATTTCGTATGGAGAAAGTCAGATGTTGGATAAAGCTTTTTACGAAGAAGAAGTTAAGAGGTTTTGCCTTGCATTTGAACAACAGTTTCACTATGGTGTCTTCTTTACATATGTGAGGCTGCGGGAGCAGGAAATCAGGAACCTAATGTGGGTTTCTGAATGTGTTGCTCAGAACCAGAAGGCCAGAGTTCATGACAGTATTGTTTTCATATTCTAG___GCATTGTCTTCAGAGCAGATGGCTATATGCTGAGCCATCAAATCAAATATGCCTTACCCTAATGATTCTATGATTTTCTTGTATTTTAACTTGTCAAGCAGCTGTATCATGGTTTCCAGCAAACTGCTTAAGCAATTTTTAGCTGCCTTGGTGTGTTACATATGTTCTATTGGGTATTATCATGAAACTTCTAGTATGCAGAACCTACTGGTAAACATCTTCATTGCTGAATATGTAAATTCTGAATTTTTTGTTCAAGCATCAATAAAATTTCTCTATCTACATT

Fln Alignment:

Contig8923___MYGFEALTFNIHGGYLEAIVRGYRSGLLTTADYNNLSQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMCDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRAAMEKYPPYQSIFAKISYGESQMLDKAFYEEEVKRFCLAFEQQFHYGVFFTYVRLREQEIRNLMWVSECVAQNQKARVHDSIVFIF
B8LLZ3_________________MYGFEALTFNIHGGYLEAIVRGYRSGLLTTADYNNLSQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDEYKHMLSQATEPLSTFLEYITYGHMIDNVVLIVTGTLHERDVQELLEKCHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECITSEDLDDMNIEIMRNTLYKAYLEDFYNFCKKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTRDDRRKLYSNFGLLYPYGHEELAVCEDIDQVRGAMEKYPPYQSIFSKISYGESQMLDKSFYEEEVKRFCLAFEQQFHYGVFFAYVRLREQEIRNLMWVSECVAQNQKSRVHDSIVFIF

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
313	33			66	0.997452
314	33	66			0.997452
315		66		33	0.997452
317		66		33	0.997452
336	25			75	0.996473
340		75		25	0.996473
364	20	80			0.995493
365	80			20	0.995493
366		80	20		0.995493
367	80			20	0.995493
390	20	80			0.995493
392			20	80	0.995493
435	12	87			0.992554
521	12		87		0.992554
522	85			14	0.993533
523	85			14	0.993533
586	16		83		0.994512
659	25			75	0.996473
662			75	25	0.996473
663	75			25	0.996473
697	25			75	0.996473
781	25	75			0.996473
783			75	25	0.996473
784	75		25		0.996473
785	75			25	0.996473
848	28			57	1.0
936		77		22	0.999999
995		90	10		0.90298
996	90			10	0.90298
1067		12	87		0.992554
1068	12		87		0.992554
1069	12			87	0.992554
1070		12		87	0.992554
1072	14			85	0.993533
1075	16	83			0.994512
1084	20		80		0.995493
1085	80	20			0.995493
1087		80		20	0.995493
1088	80			20	0.995493
1131			75	25	0.996473
1135	25		75		0.996473
1139		66		33	0.997452
1153	33	66			0.997452
1157	66			33	0.997452
1232	20			80	0.995493
1395	12	87			0.992554
1396		12		87	0.992554
1433	14	85			0.993533
1434		14		85	0.993533
1436		85		14	0.993533
1448	16			83	0.994512
1456	20			80	0.995493
1457		20	80		0.995493
1459	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain