SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8885

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8885
GAAAATTGCTCGGCATGCAGTAGAAGGCACCAAAACATCACGGGAATTAGTGATCCAGTTCAATGCTGATGTTGCTGATGGTATGCCATGGAAGTTCATTCCAACTCAGAGAGAGGTAAGGGTGAAACCTGGAGAGAGCGCTCTTGCATTCTACACTGCAGAGAACTTTAGTCAAAAAGCTATAACTGGAGTTTCTACATACAATGTTACTCCGATGAGGCTGCAATTTATTCAATAAAATCCACATT

Ace file of the UniGene biog3_v1.0_unigene8885 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3193	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome c oxidase assembly protein ctaG n=2 Tax=Andropogoneae RepID=B6T5S8_MAIZE	-	-	85%
FL-Next	sp=Cytochrome c oxidase assembly protein COX11, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	cytochrome c oxidase assembly protein ctag	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	respiratory chain complex IV assembly	GO:0008535	Biological Process	88%
Blast2go	copper ion binding	GO:0005507	Molecular Function	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c oxidase assembly protein CtaG/Cox11	IPR007533	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GWR0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 69 aas, your sequence is shorter than subject: 79 - 287

Fln protein: KIARHAVEGTKTSRELVIQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENFSQKAITGVSTYNVTPMRLQFIQ*

Protein Length: 80

Fln nts: GAAAATTGCTCGGCATGCAGTAGAAGGCACCAAAACATCACGGGAATTAGTGATCCAGTTCAATGCTGATGTTGCTGATGGTATGCCATGGAAGTTCATTCCAACTCAGAGAGAGGTAAGGGTGAAACCTGGAGAGAGCGCTCTTGCATTCTACACTGCAGAGAACTTTAGTCAAAAAGCTATAACTGGAGTTTCTACATACAATGTTACTCCGATGAGGCTGCAATTTATTCAATAAAATCCACATT

Fln Alignment:

Contig8885___KIARHAVEGTKTSRELVIQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENFSQKAITGVSTYNVTPMR
Q8GWR0_________________KIARHSESGTVTEREIVVQFNADVADGMQWKFTPTQREVRVKPGESALAFYTAENKSSAPITGVSTYNVTPMK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
231	33			66	0.997452
232		33	66		0.997452
235			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain