SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8872

Length: 559 nt

UniGene Fasta

>biog3_v1.0_unigene8872
TTGATGCAAATACTCCTCTGCTATTCTCACTATTGTCAGACTTCACAAAACACTTACCAGCTTCTCTGCCGGAGAGAGAAGATATTCGGAGGTTGAAAACATTAACCAACACTTTGGGTGTGACCACAGAACATGATACTGCATTAGTTAACTGCATCCTTTTGGACATGGTTGGTGTTGGTGATGTTACATGGGGCTTGTTGCCATATCTCTATGCAACATGTATGACATCCAACATCTGGAGTACTTCTACGTTTAATGTTAGTACTGGAGGCTTCAACAATAATGTCCATTGTTTGGCAAGGTGCATAAATGCAGTTATTGCTGCAAGTGAATTTGTTAGAGCAGAAAGGAAGAACTTGAGAGGCAGCTTCTTTCTCAGCAACAGTCAAACAGGAATGGTACTGAACTTAAGGACCTGGAAGCAGAATTACAGAACCTGGAGGGAATTACATCTGTTGAGGTGAACATAAAGGCATCTATGAAAATCTTCATTAAATGTGCTTCAACGATTATACTTCAATCCTGGAGCGACAGTAACAAGGTCCCCATTAGTGGC

Ace file of the UniGene biog3_v1.0_unigene8872

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2205	3/4
SustainPine v2.0	sp_v2.0_unigene27285	1/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nckap1 domain containing protein	-	-	8.00001e-42	28%
FL-Next	sp=Protein NAP1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%
Blast2go	protein	-	-	0.0	61%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	61%
Blast2go	actin filament organization	GO:0007015	Biological Process	61%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	61%
Blast2go	protein binding	GO:0005515	Molecular Function	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	0.0	-
Sma3	Nck-associated protein 1	IPR019137	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5S2C4

Fln msg: Separated hits, possible frame ERROR between 386 and 455, Distance to subject end: 169 aas, your sequence is shorter than subject: 186 - 1425

Fln protein: DANTPLLFSLLSDFTKHLPASLPEREDIRRLKTLTNTLGVTTEHDTALVNCILLDMVGVGDVTWGLLPYLYATCMTSNIWSTSTFNVSTGGFNNNVHCLARCINAVIAASEFVRAERKNLRGSFFLSxxxxxxxxxxxxxxxxxxxxxxxxSVEVNIKASMKIFIKCASTIILQSWSDSNKVPISG

Protein Length: 187

Fln nts: TTGATGCAAATACTCCTCTGCTATTCTCACTATTGTCAGACTTCACAAAACACTTACCAGCTTCTCTGCCGGAGAGAGAAGATATTCGGAGGTTGAAAACATTAACCAACACTTTGGGTGTGACCACAGAACATGATACTGCATTAGTTAACTGCATCCTTTTGGACATGGTTGGTGTTGGTGATGTTACATGGGGCTTGTTGCCATATCTCTATGCAACATGTATGACATCCAACATCTGGAGTACTTCTACGTTTAATGTTAGTACTGGAGGCTTCAACAATAATGTCCATTGTTTGGCAAGGTGCATAAATGCAGTTATTGCTGCAAGTGAATTTGTTAGAGCAGAAAGGAAGAACTTGAGAGGCAGCTTCTTTCTCAGCAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATCTGTTGAGGTGAACATAAAGGCATCTATGAAAATCTTCATTAAATGTGCTTCAACGATTATACTTCAATCCTGGAGCGACAGTAACAAGGTCCCCATTAGTGGC

Fln Alignment:

Contig8872___NTPLLFSLLSDFTKHLPASLPEREDIRRLKTLTNTLGVTTEHDTALVNCILLDMVGVGDVTWGLLPYLYATCMTSNIWSTSTFNVSTGGFNNNVHCLARCINAVIAASEFVRAERKNLRGSFFLSNxxxxxxxxxxxxxxxxxxxxxxxSVEVNIKASMKIFIKCASTIILQSWSDSNK
Q5S2C4_________________NASLIHSMISGIVEHIPEEIPEKKEIRRIKGVANGVGVAGDHDSEWVRLILEEVGGANDNSWSLLPYFFASFMTSNAWNTTGFNIETGGFSNNIHCLARCISAVIAGSEYVRLQREYQQQHQSLSNxxxxxxxxxxxxxxxxxxxxxxxTAEASIKSSMLLFVKFAASIVLDSWSEANR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
166	25		75		0.996473
168		75		25	0.996473
169	75		25		0.996473
337	33			66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain