SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8855

Length: 2286 nt

UniGene Fasta

>biog3_v1.0_unigene8855
GTGAACCCTCGACTCCCATTATTTGTGCACGTTTATTAGGGTTTTGGTGGTCTCTTTTGAGCTAGAATCGGAGGATCGGCTCAGTCCACCCAGGTTTCAGTGAATATTTACATTATTCACCTTCTCTTATTGCCGAGGGCTTCCTTTCTCGGAGACCACCCACACAATAATTATCGTTTTCACTTTCGAGGCGAATTCAAATCATGTCGGATCGGCTGACTAGGATTGCAATAGTGAGCTCGGATCGCTGCAAGCCCAAGAAATGCAGGCAGGAGTGTAAGAAGAGCTGTCCTGTTGTCAAAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCAGTAAAATTGCATTTATATCGGAGGAGTTGTGCATTGGTTGTGGTATCTGTGTTAAGAAATGCCCATTTGAAGCTATCCAGATCATTAACCTACCAAAGGATTTAGATAAAGACACAACACATCGATATGGACCAAACACATTCAAACTCCACAGGCTGCCTGTACCAAGGCCAGGACAGGTTCTGGGACTTGTCGGAACAAATGGTATTGGAAAATCTACTGCACTTAAGGTTCTTGCTGGAAAACTGAAACCCAACCTCGGCAGGTTCAATAATCCTCCTGACTGGCAGGAAATTCTTACATATTTCCGGGGATCAGAGTTACAAAATTATTTCACTCGTATTCTGGAAGATAATCTGAAGGCAATAATCAAGCCTCAATATGTTGATCACATACCAAAAGCAGTGCAAGGGAATGTGGGTCAGGTGCTCGATCAAAAGGATGAAAGAGACATAAAGTCAGAGCTTTGCACTGATCTGGACTTGAATCAGGTTATGGATCGAAATGTTGGTGATTTATCTGGAGGGGAATTGCAGCGGTTCGCAATTGCAGTAGTTGCAATTCAGAATGCTGAAATATATATGTTTGATGAGCCCTCTAGTTATCTTGATGTAAAGCAACGGCTTAAAGCTGCACAAGTAGTCCGGTCCCTGCTCAGGCCAAACAGCTATGTTATTGTTGTCGAGCATGACCTTAGTGTGCTTGATTATTTATCGGACTTTATCTGCTGTCTGTATGGGAAGCCTGGGGCTTACGGTGTAGTAACACTTCCATTTTCAGTTAGAGAAGGGATCAATATCTTTTTAGCTGGTTTTGTTCCAACTGAAAATCTCCGTTTTAGAGATGAATCACTTACTTTCAAGGTTGCAGAAACTCCACAGGAAAGTGCAGAAGAGATACAAAGCTATGCACGATACAAGTATCCAAATATGTGTAAAACTCAGGGTAATTTCAAGCTTAATGTGAAGGAGGGAGAATTTACTGATTCACAGATAATTGTAATGTTGGGAGAAAATGGGACAGGGAAGACAACATTTATACGCATGCTGGCTGGTTTATTGAAACCAGATACTGTAGACAATACAGATGTGGAGATACCTGAATTCAATGTGTCATATAAACCGCAGAAGATCAGCCCGAAGTTCCAGTCGACTGTCAGGCATTTATTGCACCAAAAAATCCGTGATTCATATACTCACCCTCAATTCACATCTGATGTCATGAAACCACTTCAGATTGAACAATTAATGGATCAAGATGTAGTAAATCTTTCTGGTGGAGAATTACAGAGAGTTGCATTGTGCTTATGCCTTGGGAAGCCTGCTGACATTTATCTGATAGATGAACCAAGTGCATACTTGGATTCAGAGCAGCGTATTGTTGCAGCAAAGGTCATAAAACGATTTATTCTTCATGCAAAGAAGACTGCTTTTGTTGTGGAGCATGATTTCATCATGGCAACTTATTTGGCAGACAGGGTTATTGTATATGAAGGAAGACCTTCTATTGACTGTGTCGCCAATACTCCACAAAGTCTACAAACAGGAATGAATCTGTTTTTATCGCAACTCGATATTACATTTAGACGAGATCCAACAAACTACAGGCCACGTATAAATAAATTGGATTCAACAAAGGACAGGGAACAGAAGAATGCAGGGTCATATTATTATTTGGACGATTAAAAGATGTTCCAAGTATGAGAGAAGCATAATTTATGTCATTCACAGGTCATCACCAGTTGCTACTTGCAGCCTTTGCGGGACTGTTACTCCACAAACCTGCTACTACCGAGAGATATGGCGGTGATTTTTTCTTGAACTTGATTGTATTATTCTTTCGATTTGGTGCAAGAACATGTGAAGACTAGCAATAGAAGGAGAGTAATAATAGAGAAGCAGCGGAGATACTGGTAGGCTGCAGTTTGCGAGCTTAAATGACAGAAACATT

Ace file of the UniGene biog3_v1.0_unigene8855

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14157	70/71
SustainPine v2.0	sp_v2.0_unigene66640	1/71

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter E family member 2 n=13 Tax=Spermatophyta RepID=AB2E_ARATH	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	rnase l inhibitor-like protein	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.6.3.3-	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	96%
Blast2go	iron-sulfur cluster binding	GO:0051536	Molecular Function	96%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	96%
Blast2go	ATP binding	GO:0005524	Molecular Function	96%
Blast2go	ferric-transporting ATPase activity	GO:0015408	Molecular Function	96%

Source	InterPros	Term	Type	Identity
Sma3	4Fe-4S ferredoxin-type, iron-sulpur binding domain	IPR017896	-	-
Sma3	4Fe-4S binding domain	IPR001450	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-
Sma3	ABC transporter, ABCE	IPR013283	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	RNase L inhibitor RLI, possible metal-binding domain	IPR007209	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR96

Fln msg:

Fln protein: MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDIKSELCTDLDLNQVMDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIQSYARYKYPNMCKTQGNFKLNVKEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTVDNTDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFTSDVMKPLQIEQLMDQDVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGRPSIDCVANTPQSLQTGMNLFLSQLDITFRRDPTNYRPRINKLDSTKDREQKNAGSYYYLDD*

Protein Length: 607

Fln nts: GTGAACCCTCGACTCCCATTATTTGTGCACGTTTATTAGGGTTTTGGTGGTCTCTTTTGAGCTAGAATCGGAGGATCGGCTCAGTCCACCCAGGTTTCAGTGAATATTTACATTATTCACCTTCTCTTATTGCCGAGGGCTTCCTTTCTCGGAGACCACCCACACAATAATTATCGTTTTCACTTTCGAGGCGAATTCAAATC_-_ATGTCGGATCGGCTGACTAGGATTGCAATAGTGAGCTCGGATCGCTGCAAGCCCAAGAAATGCAGGCAGGAGTGTAAGAAGAGCTGTCCTGTTGTCAAAACAGGAAAGCTCTGCATAGAAGTTTCTTCTGCCAGTAAAATTGCATTTATATCGGAGGAGTTGTGCATTGGTTGTGGTATCTGTGTTAAGAAATGCCCATTTGAAGCTATCCAGATCATTAACCTACCAAAGGATTTAGATAAAGACACAACACATCGATATGGACCAAACACATTCAAACTCCACAGGCTGCCTGTACCAAGGCCAGGACAGGTTCTGGGACTTGTCGGAACAAATGGTATTGGAAAATCTACTGCACTTAAGGTTCTTGCTGGAAAACTGAAACCCAACCTCGGCAGGTTCAATAATCCTCCTGACTGGCAGGAAATTCTTACATATTTCCGGGGATCAGAGTTACAAAATTATTTCACTCGTATTCTGGAAGATAATCTGAAGGCAATAATCAAGCCTCAATATGTTGATCACATACCAAAAGCAGTGCAAGGGAATGTGGGTCAGGTGCTCGATCAAAAGGATGAAAGAGACATAAAGTCAGAGCTTTGCACTGATCTGGACTTGAATCAGGTTATGGATCGAAATGTTGGTGATTTATCTGGAGGGGAATTGCAGCGGTTCGCAATTGCAGTAGTTGCAATTCAGAATGCTGAAATATATATGTTTGATGAGCCCTCTAGTTATCTTGATGTAAAGCAACGGCTTAAAGCTGCACAAGTAGTCCGGTCCCTGCTCAGGCCAAACAGCTATGTTATTGTTGTCGAGCATGACCTTAGTGTGCTTGATTATTTATCGGACTTTATCTGCTGTCTGTATGGGAAGCCTGGGGCTTACGGTGTAGTAACACTTCCATTTTCAGTTAGAGAAGGGATCAATATCTTTTTAGCTGGTTTTGTTCCAACTGAAAATCTCCGTTTTAGAGATGAATCACTTACTTTCAAGGTTGCAGAAACTCCACAGGAAAGTGCAGAAGAGATACAAAGCTATGCACGATACAAGTATCCAAATATGTGTAAAACTCAGGGTAATTTCAAGCTTAATGTGAAGGAGGGAGAATTTACTGATTCACAGATAATTGTAATGTTGGGAGAAAATGGGACAGGGAAGACAACATTTATACGCATGCTGGCTGGTTTATTGAAACCAGATACTGTAGACAATACAGATGTGGAGATACCTGAATTCAATGTGTCATATAAACCGCAGAAGATCAGCCCGAAGTTCCAGTCGACTGTCAGGCATTTATTGCACCAAAAAATCCGTGATTCATATACTCACCCTCAATTCACATCTGATGTCATGAAACCACTTCAGATTGAACAATTAATGGATCAAGATGTAGTAAATCTTTCTGGTGGAGAATTACAGAGAGTTGCATTGTGCTTATGCCTTGGGAAGCCTGCTGACATTTATCTGATAGATGAACCAAGTGCATACTTGGATTCAGAGCAGCGTATTGTTGCAGCAAAGGTCATAAAACGATTTATTCTTCATGCAAAGAAGACTGCTTTTGTTGTGGAGCATGATTTCATCATGGCAACTTATTTGGCAGACAGGGTTATTGTATATGAAGGAAGACCTTCTATTGACTGTGTCGCCAATACTCCACAAAGTCTACAAACAGGAATGAATCTGTTTTTATCGCAACTCGATATTACATTTAGACGAGATCCAACAAACTACAGGCCACGTATAAATAAATTGGATTCAACAAAGGACAGGGAACAGAAGAATGCAGGGTCATATTATTATTTGGACGATTAA___AAGATGTTCCAAGTATGAGAGAAGCATAATTTATGTCATTCACAGGTCATCACCAGTTGCTACTTGCAGCCTTTGCGGGACTGTTACTCCACAAACCTGCTACTACCGAGAGATATGGCGGTGATTTTTTCTTGAACTTGATTGTATTATTCTTTCGATTTGGTGCAAGAACATGTGAAGACTAGCAATAGAAGGAGAGTAATAATAGAGAAGCAGCGGAGATACTGGTAGGCTGCAGTTTGCGAGCTTAAATGACAGAAACATT

Fln Alignment:

Contig8855___MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDIKSELCTDLDLNQVMDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIQSYARYKYPNMCKTQGNFKLNVKEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTVDNTDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFTSDVMKPLQIEQLMDQDVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGRPSIDCVANTPQSLQTGMNLFLSQLDITFRRDPTNYRPRINKLDSTKDREQKNAGSYYYLDD
B8LR96_________________MSDRLTRIAIVSSDRCKPKKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFHNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPKAVQGNVGQVLEQKDERDIKSELCTDLDLNQVMDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFIFCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDESLTFKVAETPQESAEEIKSYARYKYPTMSKTQGNFKLNVKEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDTVDNTDVEIPEFNVSYKPQKISPKFQSTVRHLLHQKIRDSYTHPQFTSDVMKPLQIEQLMDQDVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIVAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGRPSVDCVANTPQSLQTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKNAGSYYYLDD

SNPs (tot: 83)

Position	A %	C %	G %	T %	Probability
143	33	66			0.997452
144	33	66			0.997452
146			33	66	0.997452
364	25			75	0.996473
365	25		75		0.996473
368		75		25	0.996473
419		83	16		0.994512
471	87			12	0.992554
472	87			12	0.992554
473		85		14	0.993533
474	85		14		0.993533
475		85		14	0.993533
657	14			85	0.993533
658	12	12		75	0.975346
660		75		25	1.0
661	71		14	14	0.984337
662	83			16	0.994512
753	16		83		0.994512
754		14		85	0.993533
755	14		85		0.993533
756			85	14	0.993533
757			85	14	0.993533
798	14		85		0.993533
799	85			14	0.993533
801		85		14	0.993533
802	12			87	0.992554
803	12			87	0.992554
827	12		87		0.992554
828		12	87		0.992554
870		87		12	0.992554
900	11	88			0.923564
903	87			12	0.992554
916	80		20		0.999996
1110	11			88	0.923564
1112			11	88	0.923564
1182	25		75		0.996473
1183	75	25			0.996473
1186		75		25	0.996473
1347		10	90		0.90298
1349	90			10	0.90298
1353			87	12	0.992554
1369		87		12	0.992554
1370	87		12		0.992554
1427			90	10	0.90298
1559		12		87	0.992554
1560	28		71		1.0
1561	71	14		14	0.984337
1562	85			14	0.993533
1563	83			16	0.994512
1564		83		16	0.994512
1609	20			80	0.995493
1612			80	20	0.995493
1710		16	83		0.994512
1711	16	83			0.994512
1712			83	16	0.994512
1748	20			80	0.995493
1753			80	20	0.995493
1827	16			83	0.994512
1828		16	83		0.994512
1830	83			16	0.994512
1831			83	16	0.994512
1845	20			80	0.995493
1846		20	80		0.995493
1848		80		20	0.995493
1974		20	80		0.995493
1975	20		80		0.995493
1976	80			20	0.995493
1977		80		20	0.995493
1986	25		75		0.996473
1987	75	25			0.996473
1989			75	25	0.996473
1990	75			25	0.996473
1997	33		66		0.997452
2003	66			33	0.997452
2121	25		75		0.996473
2125		75		25	0.996473
2176	20			80	0.995493
2240	25		75		0.996473
2241		25	75		0.996473
2243			75	25	0.996473
2244	75			25	0.996473
2246	33			66	0.997452
2250			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain