SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8841

Length: 878 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8841 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6379	3/7
SustainPine v2.0	sp_v2.0_unigene64599	4/7

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO	-	-	56%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	60%
Blast2go	beta-glucosidase 11-like	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9ZT64

Fln msg: Distance to subject end: 147 aas, your sequence is shorter than subject: 292 - 513

Fln protein: CMNADVTDDEYHRYKEDVEIMSELGVDSYRFSISWARIFPDGRGEINMGGVKYYNELIDSLLSRGIQPFVALCHYDIPQALEDLYGGWLSPNIADDFTRYAEACFRNFGGRVKYWSTFNEPNIFVPEGYDTGTYPPGRCSAVLGGCRAGNSSTEPYIAAHNILRAHASAVQLYRKEYQADQEGFIGIVMSCTWYEPLLNNSQDISAVQRLLDFSIGWYLDPIVFGEYPTAMQELVGTRLPIITLDLSEKLRRSYDFIGVNYYSTCYGADTSYNLNYTYRRYSWDSLAITTDI

Protein Length: 293

Fln nts: AATGTATGAACGCAGACGTAACAGATGACGAGTATCACCGCTATAAGGAGGATGTGGAGATAATGTCGGAACTTGGGGTGGATTCGTACCGCTTCTCCATATCTTGGGCACGCATTTTTCCTGACGGCCGTGGAGAAATCAATATGGGCGGGGTCAAGTACTATAATGAACTCATCGACTCTCTGCTGAGCCGAGGGATCCAGCCTTTTGTTGCGTTGTGTCACTACGATATTCCACAAGCCCTGGAGGATCTGTACGGGGGTTGGCTCAGCCCAAATATTGCAGATGATTTTACTAGGTATGCAGAGGCATGTTTCAGGAATTTTGGCGGGCGAGTGAAATATTGGAGCACTTTTAATGAACCCAATATCTTCGTACCAGAAGGGTATGATACGGGCACATATCCTCCAGGGAGATGCTCAGCAGTCCTTGGGGGTTGCAGGGCCGGCAACTCTTCGACTGAGCCATATATCGCTGCGCACAATATACTGCGCGCTCACGCTTCAGCGGTCCAGCTGTACAGGAAAGAGTACCAGGCTGATCAAGAAGGGTTCATTGGAATTGTAATGTCATGCACATGGTATGAACCACTGCTCAACAACTCACAAGACATTTCAGCTGTTCAGAGGCTTTTGGACTTCTCTATTGGCTGGTATTTGGATCCGATAGTATTTGGAGAATACCCAACTGCAATGCAGGAATTGGTGGGCACACGATTGCCTATTATCACATTAGATTTGAGCGAAAAATTGCGTCGCTCTTATGACTTTATTGGCGTAAATTACTACAGCACATGTTATGGTGCAGATACTTCCTATAATTTAAACTATACTTATAGAAGATATAGTTGGGACTCTTTGGCCATCACTACAGACATT

Fln Alignment:

Contig8841___NADVTDDEYHRYKEDVEIMSELGVDSYRFSISWARIFPDGRGEINMGGVKYYNELIDSLLSRGIQPFVALCHYDIPQALEDLYGGWLSPNIADDFTRYAEACFRNFGGRVKYWSTFNEPNIFVPEGYDTGTYPPGRCSAVLGG--CRAGN-SSTEPYIAAHNILRAHASAVQLYRKEYQADQEGFIGIVMSCTWYEPLLNNSQDISAVQRLLDFSIGWYLDPIVFGEYPTAMQELVGTRLPIITLDLSEKLRRSYDFIGVNYYSTCYGADT
Q9ZT64_________________NGDVAVDQYHRYMEDIELMASLGLDAYRFSISWSRILPEGRGEINMAGIEYYNNLIDALLQNGIQPFVTLFHFDLPKALEDSYGGWLSPQIINDFEAYAEICFRAFGDRVKYWATVNEPNLFVPLGYTVGIFPPTRCAAPHANPLCMTGNCSSAEPYLAAHHVLLAHASAVEKYREKYQKIQGGSIGLVISAPWYEPLENSPEERSAVDRILSFNLRWFLDPIVFGDYPQEMRERLGSRLPSISSELSAKLRGSFDYMGINHYTTLYATST

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
133	33			66	0.997452
134	33			66	0.997452
136		66	33		0.997452
137			66	33	0.997452
596		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain