SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8826

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8826
AATGTCATTCTAAATTTTGGACCGGATTTTCGTCTTTGTGAATCGATGTCTACAGGTCTTAATTTGGCAGATCAGACAGTGGTAACTAGAAAAGCCTTTAAAATCAATGTTGATGAAAAGGGTCCATTGATGCGTGGGGAAAATAGAGATGACACTTCATGTGAATCTTCCACTACCACTGAAAAGGATGTGGCATCTAAAAATTTCCATACCATTCCTCAAATGGACCAAGGAAGCATGGTGGGATGGCCTAGTAGTGTTCCTCCTCAGCAGCACTATTATGGAGGAGCTCCCTGGGCATATGGTTGGAACTTT

Ace file of the UniGene biog3_v1.0_unigene8826 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11427	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02701, zf-Dof, Dof domain, zinc finger	-	-	2.0e-38	80%
FL-Next	tr=Dof-type zinc finger protein 15; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	30%
Blast2go	dof zinc finger	-	-	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Zinc finger, Dof-type	IPR003851	-	-
Sma3	SWIRM domain	IPR007526	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E6PBM2

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 105 - 530

Fln protein: NVILNFGPDFRLCESMSTGLNLADQTVVTRKAFKINVDEKGPLMRGENRDDTSCESSTTTEKDVASKNFHTIPQMDQGSMVGWPSSVPPQQHYYGGAPWAYGWNF

Protein Length: 106

Fln nts: AATGTCATTCTAAATTTTGGACCGGATTTTCGTCTTTGTGAATCGATGTCTACAGGTCTTAATTTGGCAGATCAGACAGTGGTAACTAGAAAAGCCTTTAAAATCAATGTTGATGAAAAGGGTCCATTGATGCGTGGGGAAAATAGAGATGACACTTCATGTGAATCTTCCACTACCACTGAAAAGGATGTGGCATCTAAAAATTTCCATACCATTCCTCAAATGGACCAAGGAAGCATGGTGGGATGGCCTAGTAGTGTTCCTCCTCAGCAGCACTATTATGGAGGAGCTCCCTGGGCATATGGTTGGAACTTT

Fln Alignment:

Contig8826___ILNFGPDFRLCESMSTGLNLADQTVVTRKAFKINVDEKGPLMRGENRDDXXXXXXXXXEKDVASKNFHTIPQ----MDQGSMVGWPSSVPPQQHYYGGAPWAYGWN
E6PBM2_________________VLKFGPEVPLCESMVSALNIDEQ----------NVNNSGSAPRGENREDNPG----------PGTSYNGVPENMVHVDKNGAPVHCNGVAPVPQYYLGTPFMYPWN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
207	33			66	0.997452
209	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain