SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8785

Length: 1276 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8785

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16768	112/113

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00335, Tetraspannin, Tetraspanin family	-	-	7.0e-36	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	senescence-associated protein	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Tetraspanin	IPR018499	-	0.0	-
Sma3	Tetraspanin, subgroup	IPR000301	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV38

Fln msg:

Fln protein: MNHAANSIVGLINFLSFLLSIPIVGAGIWLATRNSGDCLRFLQWPVIIIGAAIMVLSLAGFVGACFRVTSLMWLYLFFMFLLLVAYLAFIIFAFAVAGKGHGHSVSGAAFEEYKLHDFSTWLQGRVKSSGSWNNIRSCVRDAGVCRKLGQKSVNAASFYQEHLTPIQSGCCKPPTPCGYSYVNATFWTGTLSYADSDCSIWSDDQSQLCYDCDSCKAGVLANLKHDWHKVSVLNIVIFILLVVVYVIGCGAFRNNVRRDNYESHGEATMTKSQPSRLHF*

Protein Length: 281

Fln nts: GCATGAGCAGACTGAAGTTTTCTAGCACGCTAGGGAGTGAAGAGCAGGTCTAGAGTTCGAAACGCAGCCTGCGCAAAGCGCTTTTGCAGAGTTCCAGAGTGGCGGTAGTTTGGATCTTAGTGAGAGCAGAGCATTTCATAGAGAAAGAAGAAGAAGAGTCAGAGAAACGGGCAGC_-_ATGAATCACGCCGCGAACAGCATAGTGGGGCTGATAAATTTCTTGTCGTTCTTACTGTCGATCCCAATCGTGGGCGCCGGGATATGGCTGGCCACTAGAAATAGCGGTGATTGCCTGAGGTTTCTTCAATGGCCCGTCATAATTATTGGGGCGGCCATCATGGTGCTATCTCTGGCAGGCTTTGTGGGGGCTTGTTTCAGAGTGACATCCCTCATGTGGCTTTATCTATTCTTCATGTTTCTACTGCTGGTAGCTTACCTGGCATTCATCATATTCGCCTTCGCAGTGGCTGGGAAGGGCCACGGCCACTCTGTGTCCGGGGCGGCCTTCGAGGAGTACAAGCTCCATGATTTCTCCACCTGGCTGCAAGGTCGCGTCAAAAGCTCTGGAAGCTGGAACAACATCAGGTCTTGTGTTCGAGACGCTGGGGTGTGCAGGAAACTTGGACAGAAGAGTGTGAACGCTGCAAGTTTCTATCAGGAGCATTTGACTCCGATTCAGTCGGGTTGTTGCAAACCACCAACTCCTTGTGGATACAGCTATGTAAATGCCACATTTTGGACTGGGACATTATCATATGCAGATTCGGACTGTTCAATATGGAGTGATGACCAAAGCCAGCTTTGTTATGATTGCGATTCATGCAAAGCTGGTGTTTTGGCAAATCTGAAGCATGACTGGCATAAGGTCTCTGTTCTGAACATTGTGATTTTCATATTGCTTGTTGTGGTGTATGTTATTGGATGCGGTGCTTTCAGAAATAACGTAAGAAGGGACAATTATGAGTCTCATGGAGAAGCCACGATGACAAAGTCCCAGCCTAGTAGGCTACACTTTTGA___GAACAGTTATATTTCTGTTTAGATGAACCCCCCTTTTGGTTTTCGAAGGTAAAATAGTTTTTATTTTTCGCATATTGCCTTTCAGGCATTCTATACAGTTGCCCTCTTGTACATTTACCTCAATAGCTGGTTATTTTCTTAGTCTTTCCTTGGCATGTTCTACCTTTTCATGGTTTAGATGTACTTTTAACAGACCTTTCATGTATGCAAATCCTGGCGGTTGGGGCTGTTTATGTTTTAGATATGAAGATTTAGGACATT

Fln Alignment:

Contig8785___MNHAANSIVGLINFLSFLLSIPIVGAGIWLATRNSGDCLRFLQWPVIIIGAAIMVLSLAGFVGACFRVTSXXXXXXXXXXXXXXXXXXXIIFAFAVAGKGHGHSVSGAAFEEYKLHDFSTWLQGRVKSSGSWNNIRSCVRDAGVCRKLGQKSV--NAASFYQEHLTPIQSGCCKPPTPCGYSYVNATFWTGTLSYADSDCSIW-SDDQSQLCYDCDSCKAGVLANLKHDWHKXXXXXXXXXXXXXXXXXXGCGAFRNNVRRDNYESHGEATMTKSQPSRLHF
A9NV38_________________MNHATNSIVGLINFLTFLLSIPIVGAGIWLATRHSGDCLRFLQWPIIIIGAAIMLLSLAGFMGACFRVTSLMWLYLFFMFLLLLAYLVFIIFAFAVAGKGHGHSVPGTGFEEYKLHDFSTWLQDRVRSSGSWNNIRSCVRDAGVCRKLGQKSMYESSAGFYQEHLTPIQSGCCKPPTPCGYTYVNATFWTGTISYADSDCSKWSSDDQSQLCYDCDSCKAGVLANLKHDWHKVSVLNIVIFILLVVVYVIGCGAFRNNLRRDNYESQGEARMTKSQPSRLPF

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
67	16	83			0.994512
70		83		16	0.994512
143		16	83		0.994512
145			83	16	0.994512
146	83			16	0.994512
202		16	83		0.994512
204			83	16	0.994512
219	20	80			0.995493
220	20			80	0.995493
264	25		75		0.996473
265	25	75			0.996473
267	25		75		0.996473
268			50	25	0.995533
272		75		25	0.996473
400	11			88	0.923564
805	9			72	0.999994
950			90	9	0.999842
951			90	9	0.999842
1269		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
145	157	AAG AAG AAG AAG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain