SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8780

Length: 1048 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8780

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21458	1/31
SustainPine v2.0	sp_v2.0_unigene22799	25/31
SustainPine v2.0	sp_v2.0_unigene29888	4/31

Source	Descriptions	Term	Type	Identity
AutoFact	RAD23 n=2 Tax=Pinaceae RepID=B5M6R6_PINSY	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	rad23 protein	-	-	75%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQD9

Fln msg: Separated hits, possible frame ERROR between 760 and 769, Distance to subject end: 26 aas, your sequence is shorter than subject: 314 - 403

Fln protein: MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQIQGAQTYPSEQQLVIYQGKVLKDESTIEENKVSENTFLVVMLSKTKATTAGASSTQAQPSVSASPAQNPVALVPAAAAAQLPTQAPATTTPAIGAGATPAIGTGTTQTDVDADAYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPETAEVAPPVTRPTLxxxxPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAEGDFFNQLAGAMPQAINVTPEEREAIERLEAMGFDHALVI

Protein Length: 315

Fln nts: AATGTTGGTTTCTTTGGCAGTGCAAGCGATATTGTGTCTCGTTTTGCCTGCTGTGCGGACGGTTTAGCACTTCGGAGGCCGGTAGGGACCGAATTCGGGCGTCAGG_-_ATGAAGGTTTCTGTCAAAACCTTGAAGGGTAACCACTTTGATATCGAGGTGCAGCCCACGGATACTGTTTTAAATGTTAAGAAACAAATAGAGCAAATTCAAGGAGCACAGACTTACCCGAGTGAACAGCAGCTGGTGATTTATCAGGGCAAGGTGCTGAAGGATGAAAGCACTATTGAAGAAAACAAAGTCAGTGAGAATACATTCCTTGTGGTTATGCTGTCTAAGACTAAAGCAACAACGGCTGGTGCCTCATCGACACAGGCCCAACCATCTGTTTCTGCATCTCCAGCCCAGAACCCTGTAGCACTGGTGCCAGCTGCAGCAGCAGCTCAGCTCCCAACTCAGGCTCCTGCAACTACTACGCCTGCCATTGGCGCTGGAGCAACGCCTGCCATTGGCACTGGAACAACGCAGACAGATGTAGATGCAGATGCATATGGACAAGCAGCATCAAATTTAGTTGCAGGAAATAACCTTGAACATGTTATTCAACAAATTCTTGACATGGGTGGTGGTAGCTGGGATAGAGATACAGTTGTTCGTGCCTTACGTGCAGCCTACAACAACCCTGAGCGTGCTGTTGAATATCTATATTCTGGCATTCCTGAGACAGCAGAAGTAGCTCCTCCTGTAACTCGCCCAACACTTTCxxxxxxxxxCCCACAGTTCCAGGCTCTACGTACAATGGTCCAGGCCAACCCTCAAATATTGCAGCCAATGCTTCAGGAGTTGAGCAAACAGAATCCTCAATTGATGCGGCTTATCCAAGACCACCAGGCTGATTTTCTCCGCTTAGTTAATGAACCGGTTGAAGGTGCTGAAGGGGATTTCTTCAACCAGCTCGCTGGAGCAATGCCCCAGGCTATTAATGTAACTCCAGAGGAGCGTGAGGCAATTGAGCGTCTTGAGGCCATGGGCTTTGATCATGCCCTTGTTATAG

Fln Alignment:

Contig8780___MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQIQGAQTYPSEQQLVIYQGKVLKDESTIEENKVSENTFLVVMLxxxPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAEGDFFNQLAGAMPQAINVTPEEREAIERLEAMGFDHALVI
C0PQD9_________________MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIEENKVTENTFLVVMLxxxPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEGAEGDFFNQLAGAMPQAINVTPEEREAIERLEAMGFDRALVI

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
542	14		85		0.993533
594	20			80	0.995493
595		20		80	0.995493
621	25		75		0.996473
622		25		75	0.996473
623	25		75		0.996473
624			75	25	0.996473
626	80	20			0.995493
627	20		80		0.995493
628		80	20		0.995493
629	20		20		0.99255
631			80	20	0.995493
688	25	75			0.996473
689		25		75	0.996473
690	25		75		0.996473
874	25	75			0.996473
877	75			25	0.996473
878			75	25	0.996473
900	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain