SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8738

Length: 314 nt

UniGene Fasta

>biog3_v1.0_unigene8738
GATGTGATTGGAAATGATTTGAGTTTGACAGTGAGGCTTGAGATCGTGTATGGGAAATTAAGTATCGGTTCAGTGCGTAGTGCCTTTGAAGAATCAATTGGAAGTCGACTACAGAAATTCAGTGGAAGCCAGAACAAGGAATTATTGCAAAGATTCACATCTCAGTTTAAGGATGATCAGAAGCTACCACGTGGCACAAAAATACACATTACCAGATTCCCTGGTCACGTTCTCCAGACAAAAATTGATGAAAAGGAGGTTGGCAGCATTCAGAGCCAGCTGTTGTGTCGTTCTTTGTTTGACCTATATATTGG

Ace file of the UniGene biog3_v1.0_unigene8738

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9491	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone-flavanone isomerase family protein [Arabidopsis thaliana] emb\|CAB86418.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAL38325.1\| unknown protein [Arabidopsis thaliana] gb\|AAM10188.1\| unknown protein [Arabidopsis thaliana] gb\|AAM65770.1\| unkno	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	chalcone isomerase	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chalcone isomerase.	EC:5.5.1.6	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Flavonoid biosynthesis	00941	73%
Blast2go	Biosynthesis of phenylpropanoids	01061	73%
Blast2go	Metabolic pathways	01100	73%
Blast2go	Biosynthesis of secondary metabolites	01110	73%

Source	GOs	Term	Type	Identity
Blast2go	flavonoid biosynthetic process	GO:0009813	Biological Process	73%
Blast2go	cellular modified amino acid biosynthetic process	GO:0042398	Biological Process	73%
Blast2go	chalcone isomerase activity	GO:0045430	Molecular Function	73%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chalcone isomerase, subgroup	IPR003466	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXH6

Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 104 - 300

Fln protein: DVIGNDLSLTVRLEIVYGKLSIGSVRSAFEESIGSRLQKFSGSQNKELLQRFTSQFKDDQKLPRGTKIHITRFPGHVLQTKIDEKEVGSIQSQLLCRSLFDLYI

Protein Length: 105

Fln nts: GATGTGATTGGAAATGATTTGAGTTTGACAGTGAGGCTTGAGATCGTGTATGGGAAATTAAGTATCGGTTCAGTGCGTAGTGCCTTTGAAGAATCAATTGGAAGTCGACTACAGAAATTCAGTGGAAGCCAGAACAAGGAATTATTGCAAAGATTCACATCTCAGTTTAAGGATGATCAGAAGCTACCACGTGGCACAAAAATACACATTACCAGATTCCCTGGTCACGTTCTCCAGACAAAAATTGATGAAAAGGAGGTTGGCAGCATTCAGAGCCAGCTGTTGTGTCGTTCTTTGTTTGACCTATATATTGG

Fln Alignment:

Contig8738___DVIGNDLSLTVRLEIVYGKLSIGSVRSAFEESIGSRLQKFSGSQNKELLQRFTSQFKDDQKLPRGTKIHITRFPGHVLQTKIDEKEVGSIQSQLLCRSLFDLYI
A9NXH6_________________DVIGNDLSLTVRLEIVYGKLSIGSVRSAFEESIGSRLQKFSGSQNKELLQRFTSQFKDDHKLPRGTKIHITRFPGHILQTKIDEKEVGSIQSQLLCRSLFDLYI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
201	66			33	0.997452
202	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain