SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8716

Length: 238 nt

UniGene Fasta

>biog3_v1.0_unigene8716
CAAACATGCTCGATCCAATGAGTATGTGGCTCGAACATTACTGGATGACTTACCTCCACTAGGTGATCGCCTTAGGGTGTTAAAGCTCAAGGAAGCAGACAGACTCGCACAAAAGAAAATGCCTTATGGAGAGAAAGAAGAGAGATCTCAGAACGAGTACAAGCGAGGGATCAGTGCCTGGAACTTTGACCTGGAGGACTTGAAAGCTGAGGCTGCTTTGATTAAAGATTATGACATT

Ace file of the UniGene biog3_v1.0_unigene8716

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11401	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase [Carica papaya]	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HUZ1

Fln msg: Distance to subject end: 308 aas, your sequence is shorter than subject: 79 - 662

Fln protein: KHARSNEYVARTLLDDLPPLGDRLRVLKLKEADRLAQKKMPYGEKEERSQNEYKRGISAWNFDLEDLKAEAALIKDYDI

Protein Length: 80

Fln nts: CAAACATGCTCGATCCAATGAGTATGTGGCTCGAACATTACTGGATGACTTACCTCCACTAGGTGATCGCCTTAGGGTGTTAAAGCTCAAGGAAGCAGACAGACTCGCACAAAAGAAAATGCCTTATGGAGAGAAAGAAGAGAGATCTCAGAACGAGTACAAGCGAGGGATCAGTGCCTGGAACTTTGACCTGGAGGACTTGAAAGCTGAGGCTGCTTTGATTAAAGATTATGACATT

Fln Alignment:

Contig8716___KHARSNEYVARTXXXXXXXXXXXXXXXKLKEADRLAQKKMPYGEKEERSQNEYKRGISAWNFDLEDLKAEAALIKDYDI
F6HUZ1_________________KHARSNEYLARTILEGLTPLGDRFRTLKAKEADLLVQNKALYGDKEQLSQQEYIRGISAWNFNLEDLKNQAALIQDYDV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
140		25	75		0.996473
142			75	25	0.996473
143	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain