SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8682

Length: 359 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8682
TGGAGATACCACCAGAGATGCAGACGAGGAGAATCTGGAAATTTCTGGGAAATCACAGTAGCATTCAAAGGCTTGCATTTGAGACAGCTTGATATTGCAGGCAATCCTGCTAATGATGAAAAATGTAGGAGGCTGTTGATGAAAACACTTCCTTCACTCAAATGGCTTGATGGCACTTCCATAAATTGATGCAGTTTGTCTCAGTATAGCATATTTTCAGCCTGTAGATGAAGTTCTGTTTATGATAAAGCTTACTTGAAAGTGATGCCTTGGGACTCCTTCCACTTGCAGGCAATTGAAACCGTTGAAATGGTGATAATAATTAATTAAGAACTTGCAACTTATATTGAAGACACATT

Ace file of the UniGene biog3_v1.0_unigene8682 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19262	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	RAB geranylgeranyl transferase alpha subunit 1 [Arabidopsis thaliana] ref\|NP_001078443.1\| RAB geranylgeranyl transferase alpha subunit 1 [Arabidopsis thaliana] gb\|AAL60030.1\| putative Rab geranylgeranyl transferase [Arabidopsis thaliana] gb\|AAM51433.1\| pu	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	53%
Blast2go	rab geranylgeranyl transferase like protein	-	-	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	0.0	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein prenyltransferase, alpha subunit	IPR002088	-	0.0	-
Sma3	Protein prenyltransferase	IPR008940	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BNJ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 33 aas, your sequence is shorter than subject: 63 - 216

Fln protein: WRYHQRCRRGESGNFWEITVAFKGLHLRQLDIAGNPANDEKCRRLLMKTLPSLKWLDGTSIN*

Protein Length: 64

Fln nts: TGGAGATACCACCAGAGATGCAGACGAGGAGAATCTGGAAATTTCTGGGAAATCACAGTAGCATTCAAAGGCTTGCATTTGAGACAGCTTGATATTGCAGGCAATCCTGCTAATGATGAAAAATGTAGGAGGCTGTTGATGAAAACACTTCCTTCACTCAAATGGCTTGATGGCACTTCCATAAATTGATGCAGTTTGTCTCAGTATAGCATATTTTCAGCCTGTAGATGAAGTTCTGTTTATGATAAAGCTTACTTGAAAGTGATGCCTTGGGACTCCTTCCACTTGCAGGCAATTGAAACCGTTGAAATGGTGATAATAATTAATTAAGAACTTGCAACTTATATTGAAGACACATT

Fln Alignment:

Contig8682___NFWEITVAFKGLHLRQLDIAGNPANDEKCRRLLMKTLPSLKWLDG
A5BNJ0_________________NYWEAFAIFRGFNLTQLDIVGNAITDEKFKSFLIKVLPTLKWVDG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
109		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain