SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8663

Length: 289 nt

UniGene Fasta

>biog3_v1.0_unigene8663
AATGTTATATTGACATGCTTGAAAGACTTGGTGATAAACATTGTCAATATGAGTTTATAAAAACTCTTGCCAGTAAATGTTCTTATCGGCTTTTTGGCAAAGAGCACGTAAAAGAATTGCTTAAAGAGATTGCAGTAAATAAGTTGGCTGGGAAGGATGAATTGATTCAGTCTGGCATGAATCTACTTGTGCTTTTTGCAGGGCTTTTTCCTTGCCTTGTTGAGGGGTCAGAAGAAGAATTGCTCCAGCTACTTAAAGAAGATAATGAATGCATCAAGGAAGGTGTTGT

Ace file of the UniGene biog3_v1.0_unigene8663

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14806	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Androgen induced inhibitor of proliferation (As3) / pds5, putative n=1 Tax=Ricinus communis RepID=B9T579_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	sister chromatid cohesion protein pds5	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AJA7

Fln msg: Distance to subject end: 1198 aas, your sequence is shorter than subject: 95 - 1922

Fln protein: CYIDMLERLGDKHCQYEFIKTLASKCSYRLFGKEHVKELLKEIAVNKLAGKDELIQSGMNLLVLFAGLFPCLVEGSEEELLQLLKEDNECIKEGV

Protein Length: 96

Fln nts: AATGTTATATTGACATGCTTGAAAGACTTGGTGATAAACATTGTCAATATGAGTTTATAAAAACTCTTGCCAGTAAATGTTCTTATCGGCTTTTTGGCAAAGAGCACGTAAAAGAATTGCTTAAAGAGATTGCAGTAAATAAGTTGGCTGGGAAGGATGAATTGATTCAGTCTGGCATGAATCTACTTGTGCTTTTTGCAGGGCTTTTTCCTTGCCTTGTTGAGGGGTCAGAAGAAGAATTGCTCCAGCTACTTAAAGAAGATAATGAATGCATCAAGGAAGGTGTTGT

Fln Alignment:

Contig8663___DMLERLGDKHCQYEFIKTLASKCSYRLFGKEHVKELLKEIAVNKLAGKDELIQSGMNLLVLFAGLFPCLVEGSEEELLQLLKEDNECIKEGV
A5AJA7_________________DLLRILGEKHRLYDFLGTLSLKCSYLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDDNEIIKEGV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
245	33		66		0.997452
249		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain