SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8650

Length: 318 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8650
AATGTTTCTGATAAAAAGGCCCTCTTGGCTTTCAAGGCAGCGGTTGGGAAGCGTCTGAACTGGTCCCAGTCCACAAATCCGTGCACCCCCTGGTTCGGAATTACGTGTATAGGATCCCGCGTGACAGAGGTGAGACTTCCTGGACGGTCTCTGTTTGGGTCAATCCCATCGGGAATTCTGGGAAACTTGAGCGAGTTAGGAGTATTGAGCTTGAGATACAACTCGCTCAATGGTCCTGTACCTTCAGATCTAGGTAAGTGCACTCAGTTGAGGAAGCTGTACTTACAGAGCAATGGATTTACCGGGCCCATACCATCA

Ace file of the UniGene biog3_v1.0_unigene8650 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21837	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5A8_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	probable inactive receptor kinase at5g58300-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	67%
Blast2go	catalytic activity	GO:0003824	Molecular Function	67%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	67%
Blast2go	plasma membrane	GO:0005886	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSK3

Fln msg: Distance to subject end: 476 aas, your sequence is shorter than subject: 106 - 606

Fln protein: NVSDKKALLAFKAAVGKRLNWSQSTNPCTPWFGITCIGSRVTEVRLPGRSLFGSIPSGILGNLSELGVLSLRYNSLNGPVPSDLGKCTQLRKLYLQSNGFTGPIPS

Protein Length: 107

Fln nts: AATGTTTCTGATAAAAAGGCCCTCTTGGCTTTCAAGGCAGCGGTTGGGAAGCGTCTGAACTGGTCCCAGTCCACAAATCCGTGCACCCCCTGGTTCGGAATTACGTGTATAGGATCCCGCGTGACAGAGGTGAGACTTCCTGGACGGTCTCTGTTTGGGTCAATCCCATCGGGAATTCTGGGAAACTTGAGCGAGTTAGGAGTATTGAGCTTGAGATACAACTCGCTCAATGGTCCTGTACCTTCAGATCTAGGTAAGTGCACTCAGTTGAGGAAGCTGTACTTACAGAGCAATGGATTTACCGGGCCCATACCATCA

Fln Alignment:

Contig8650___SDKKALLAFKAAVGKRLN----WSQS-TNPCTPWFGITCIGS-RVTEVRLPGRSLFGSIPSGILGNLSELGVLSLRYNSLNGPVPSDLGKCTQLRKLYLQSNGFTGPIPS
C0PSK3_________________AEGNALIALKTALKDSKNLLSTWDPSLVDPCISWFRVNCNSDGRVTSLNLESMG-FSGVLSPQIGELKYLSTVALQDNHISGTLPSELGNMTSLRNLNLENNNLTGNIPS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
77			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain