SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8630

Length: 2113 nt

UniGene Fasta

>biog3_v1.0_unigene8630
TCGATCTGGATCTGGCCATTGAGTAGCATTCAAGTTAGTGTAAGTGAAGTGATCAGCAGGAGCAATCAACAGCATGGGGTTCTCTGATGCCAATACCAACATGAGGGTCCAGAGTCGTTGGTGCTTCACATCTGAGATTTTGCTGGGATTGACACTAATTATAGCATTTGCATTCTCTCCCACTGGAGCATATGATCCACTAGATCCAAACGGCAACATAACATAAAATGGGATATCATGTCCTGGACACCGGATGGTTATCTGGCTGTTGTGACTATGAACAATTTTCAGCAGTACAGACACATACAAAGTCCTGGATGGACTTTGGGATGGACTTGGGCAAAGAAGGAGGTGATTTGGTCAATGGTTGGTGCTCAGACGACGGAGCAAGGGGATTGTTCTAAGTACAAAGGAAATATTCCACATTGTTGCAAGAAAGATCCCACTGTTGTTGATTTATTACCAGGAACTCCTTACAACCAACAGATTGCTAATTGCTGTAAAGGTGGAGTGATTGCATCTTGGGCCCAAGATCCACCTAATGCTGTAAGCGCCTTCCAAATAAGTGCGGGCAATGCCGGAACCACTAACACAACAGTACGCTTGCCCAAAAATTTTACTCTCAGGGCACCTGGACCAGGGTATACTTGCGGCCCTGCAAAGAAGGTCCGGGCGAGTAAGTTCCTTAGCGCAGACGGTCGTCGAGTCACTCAAGCACTCATGACATGGAATATAACATGTACATACTCCCAATTCCTAGCGCAGAAAACACCAAGTTGCTGTGTCTCACTATCATCATTCTACAATGATACCATAGTTCCATGTCCAGCTTGTACATGTGGTTGCCAGAATAATATTACCCAGCCGGGCACTTGCGTTGAGAGAGACTCACCATATCTGCCTACTCTGATCAACACGCCGAGTAAAAACCCTGCCCCTCTGATAGAATGCACCCCACACATGTGCCCAATTAAAATCCATTGGCATGTCAAGTTGAATTACAAGGACTATTGGCGAGTGAAAGTCACAATTACAAATTTCAATTACAGGATGAATTACACACAATGGAACCTTGTTGTCCAGCACCCGAATTTTGATAATGTGACCCAATTGTTCAGCTTCAACTACAAGCCATTAACACCATATGGGACAATAAATGATACTGCAATGCTTTGGGGAGTTAAATACTACAATGACATGCTCATGCAGGCTGGGAAAATGGGAAATGTGCAATCTGAACTGCTATTTCAGAAAGATAAGCAAACATTTACTTTCAAACAAGGGTGGGCCTTTCCTCGGAGATTATACTTCAATGGTGATGATTGTGTGTTGCCACCACCAGATGCATATCCATGGTTACCCAACGCGGGTCCTTCGCTAAGGGTTGGGAAAGTCTTTCTTTTGATTGTTTCTCTTGTGGTTTCAGCATGTTTGTTAGCATTCCTATAGGAGGATACTGTCAATATTTATGGCACAAAGAAGCCCCTGGAGTTTGAGGGATGGGCAGAACAGATTAGATTATAGTGTCAGTGCATGGTTGATCTCATGTTACAACATCATTGGAAAATACGTTAGTGCAATATCGCTTCTATGGTGTGGAGTGTGCAAAGCATCTATATATCATAGTAGCACAGAAACCATGCTGGTTGTTATGTTGCGGGGCACCAAGAGTTGGTTTACCCAGGCCCTAAACCTGCACTTGAATGCGTTAAAGACATTCTTTGGTAAGGTAGTCACCTTGTTAGACTTCTTGTAGATGATTCTTTTCTAAGGTCTTATTGAATTGCAAAGCAACTTTAAATTATGTTCAATTGCATGTAGCTGAAGAGAGGGCAGATTTGGTCTGTAAGTTTTGCTTGGAGTTTCATGATGGAAACTCTATGCATGCCAGAAGCAGCCTCTATAAACTGCTAAATGAGTGAAATTGGTTTATGTATTATGTAATTTATTAGAACCTAGAACTAGGGACTTACTGGGATTATTAATTATCAGCATTTCTTAGTGGTTTCATCATTTCTATAGCTGATCGAGGTGCCACATCTGATGATGGAGGAATGTTCTGTCCTGCAAGATTATTATTCTTATGCTAAAGGAAGGTCTTTGTATATCTATC

Ace file of the UniGene biog3_v1.0_unigene8630

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16938	16/60
SustainPine v2.0	sp_v2.0_unigene17149	43/60

Source	Descriptions	Term	Type	Identity
AutoFact	Ch-cobra n=1 Tax=Cunninghamia lanceolata RepID=B7S746_CUNLA	-	-	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein cobra-like	-	-	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	COBRA-like	IPR017391	-	0.0	-
Sma3	Glycosyl-phosphatidyl inositol-anchored, plant	IPR006918	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
288	25			75	0.996473
292			80	20	0.995493
293		80		20	0.995493
427	14			85	0.993533
428		14		85	0.993533
429	14		85		0.993533
517	16			83	0.994512
522		83		16	0.994512
524	16			83	0.994512
525	16		83		0.994512
526			83	16	0.994512
528		83		16	0.994512
548	33		66		1.0
549		33		66	1.0
551	66			33	1.0
552			66	33	1.0
613	75			25	0.996473
614	75		25		0.996473
615	75			25	0.996473
655	33		66		0.997452
656			66	33	0.997452
657		66		33	0.997452
803	14			85	0.993533
805		85	14		0.993533
1030	11	88			0.923564
1032		88		11	0.923564
1033	88		11		0.923564
1107		11		88	0.923564
1172	88			11	0.923564
1675	12		87		0.992554
1713	10		90		0.90298
1750		12	87		0.992554
1819	14		85		0.993533
1841		16	83		0.994512
1931	25			75	0.996473
1932		25	75		0.996473
1933	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain