SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8612

Length: 900 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8612 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene678	11/11

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF668 multi-domain protein	-	-	2.0e-30	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	uncharacterized protein	-	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Protein of unknown function DUF668	IPR007700	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADD1

Fln msg: Overlapping hits, possible frame ERROR between 499 and 493, your sequence is longer than subject: 284 - 215

Fln protein: MCPAGLALHYANIVNQIDSLVSRPSSVPPNTRDTLYRGLPLSIKSALRSKLQSYPVEEELTVPQIKAEMEKILTWLVPVATNTTKAHHGFGWVGEWASTGSALDRRLPGHNELTLVQTFHYAEKERTEYYIFELIVWLHHLVSRAKNSLNGSKSPIKSPVRSPxxxxANLFVTSPENPTPTGNGQDKPLLELSEADRDMLKAVNFRKLTPGISKSQEFDTAKLRSIDESTCKLIKSNSHSPTTNTKNEFNGLRRHSTLPNLDFDINRTKALDVIDRVDNLSLL*

Protein Length: 285

Fln nts: A_-_ATGTGTCCTGCTGGTCTTGCATTACACTATGCAAATATTGTCAACCAAATTGATAGTCTTGTTTCTCGTCCAAGTTCTGTTCCTCCCAACACCAGAGATACACTGTATCGAGGTTTGCCTCTAAGTATAAAGTCAGCTTTGCGGTCCAAGCTTCAATCATATCCTGTGGAAGAGGAGCTTACTGTCCCACAGATCAAAGCAGAGATGGAGAAAATTTTAACGTGGCTTGTTCCAGTTGCTACCAATACAACCAAAGCACATCATGGGTTTGGATGGGTTGGAGAGTGGGCAAGCACAGGATCTGCCTTAGATCGAAGGTTACCTGGACACAATGAGTTGACACTCGTTCAAACTTTTCACTATGCAGAGAAAGAGAGGACAGAATATTACATTTTTGAACTGATTGTGTGGCTTCATCATCTTGTTAGTCGAGCCAAAAACAGCCTCAATGGCAGCAAGTCTCCTATTAAATCACCTGTGCGTTCTCCAxxxxxxxxxxxxGCAAATCTCTTTGTGACAAGTCCAGAAAATCCAACTCCGACAGGAAATGGACAGGATAAACCTCTTCTTGAGCTTTCGGAGGCAGACAGAGATATGTTAAAAGCTGTAAATTTCAGAAAATTGACACCTGGGATAAGTAAAAGTCAAGAGTTTGACACAGCTAAGTTAAGATCCATTGATGAGTCTACATGTAAGCTGATCAAAAGCAATAGTCACTCTCCCACTACCAACACGAAGAATGAGTTTAATGGACTGAGGCGACATTCTACACTACCAAACTTAGACTTTGACATCAATAGGACTAAAGCTCTAGATGTGATAGATAGGGTTGATAATCTGAGTCTTTTGTAA___CAGTTACGTCCTTGCCTTCTCTTGATTCACATTCTGTCTTTTAACATT

Fln Alignment:

Contig8612___MEKILTWLVPVATNTTKAHHGFGWVGEWASTGSALDRRLPGHNELTLVQTFHYAEKERTEYYIFELIVWLHHLVSRAKNSLNGSKSPIKSPVRSPVxxTANLFVTSPENPTPTGNGQDKPLLELSEADRDMLKAVNFRKLTPGISKSQEFDTAKLRSIDESTCKLIKSNSHSPTTNTKNEFNGLRRHSTLPNLDFDINRTKALDVIDRVDN
D5ADD1_________________MEKILTWLVPVATNTTKAHHGFGWVGEWANTGSALDRRLPGHNELTLIQTFHYAEKKRTESYIFELIVWLHHLVSRTKNSLNGNKSPIKSPVRSPVxxTANLSVTTPDKPTPTGNGQDKPLLELSQADRDMLKAVNFRRLTPGISKSQEFDTAKLRSADESTCKLIKSNSHSPTTNTKNEFNGPRRHTTLPTIDFDIDRTKALDVIDRVDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain