SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8588

Length: 237 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8588
TCCTGTGGCATCTCTGCTTTGGCTGGACGACGAGCTCGAATCTTCTGTTCGTCTGGATTCCATCATAACTGTAGTAGATGCCAAAATCTCCGCCTGCAGCTCAGTGAACAGCGGGAGGGAAGTGAACTTCCTGAAGCATATTTGCAGATTGCATTTGCGGATGTTGTTCTCCTCAATAAGGTTGATTTGATTGTTGAGGAACATGAAGGCATTTCACAGTCAGTGGTCCTAGAGGAT

Ace file of the UniGene biog3_v1.0_unigene8588 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8285	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] gb\|AAY34160.1\| At1g26520 [Arabidopsis thaliana] gb\|AEE30700.1\| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana]	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	100%
Blast2go	cobw domain-containing protein 1-like	-	-	73%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Cobalamin (vitamin B12) biosynthesis CobW-like	IPR003495	-	-
Sma3	Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal	IPR011629	-	-
Sma3	Chromatin associated protein KTI12	IPR013641	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HF74

Fln msg: Overlapping hits, possible frame ERROR between 85 and 82, Distance to subject end: 558 aas, your sequence is shorter than subject: 79 - 769

Fln protein: PVASLLWLDDELESSVRLDSIITVVDxxxLRLQLSEQREGSELPEAYLQIAFADVVLLNKVDLIVEEHEGISQSVVLED

Protein Length: 80

Fln nts: TCCTGTGGCATCTCTGCTTTGGCTGGACGACGAGCTCGAATCTTCTGTTCGTCTGGATTCCATCATAACTGTAGTAGATxxxxxxxxxCTCCGCCTGCAGCTCAGTGAACAGCGGGAGGGAAGTGAACTTCCTGAAGCATATTTGCAGATTGCATTTGCGGATGTTGTTCTCCTCAATAAGGTTGATTTGATTGTTGAGGAACATGAAGGCATTTCACAGTCAGTGGTCCTAGAGGAT

Fln Alignment:

Contig8588___VRLDSIITVVDAxNLRLQLSEQREGSELPEAYLQIAFADVVLLNKVDLIVEEHEG
F6HF74_________________VRLDSIITVVDAxNLRFQLNSHHGSSSFPEAFLQIAFADVVILNKVDLVSPEESG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
118			50	50	1.0
144		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain