SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8569

Length: 433 nt

UniGene Fasta

>biog3_v1.0_unigene8569
GAATGAAACGTCTTTGAATGCAGATCAAGAAAAGGCCATCAAGGAGCTTCACAGCAAGTATCCTCGTTACTCGGAGAACTTTTGACGAATATGCTGGCTGATCAGGATGGCGATTTGAAAGAGCTTGAAGCACTCTTAAAAACATTACAACGCCAAGAGATTAGAGCTGCTAATCGAAAGGTGTCAGGTCCATCATCTTCAAAGGCAACAGATAACACAGATGTTTCCACGGAATCACCACCCTCAAAGCTACAGAATGCATCTAAGGGCAAAACCAGAGGAAAGAGTGCCAAGAAGAGAGAAAGTAATACAACTTTATCCGTAGGAAGAGTTCACAAAACGCGTCGAAAAACTGCTTCCGACGATGTGAAGGCCGCTTCTAAAACACCAACAAGGGATAACGTAAACTCTGCATCTCCTTCAAGTCCACATT

Ace file of the UniGene biog3_v1.0_unigene8569

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene739	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	YDG_SRA multi-domain protein	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	zinc finger	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of methylation-dependent chromatin silencing	GO:0090309	Biological Process	73%
Blast2go	centromeric heterochromatin assembly	GO:0031508	Biological Process	73%
Blast2go	DNA methylation on cytosine within a CG sequence	GO:0010424	Biological Process	73%
Blast2go	cell division	GO:0051301	Biological Process	73%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	histone binding	GO:0042393	Molecular Function	73%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	73%
Blast2go	methyl-CpNpN binding	GO:0010429	Molecular Function	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	double-stranded methylated DNA binding	GO:0010385	Molecular Function	73%
Blast2go	methyl-CpG binding	GO:0008327	Molecular Function	73%
Blast2go	chromatin binding	GO:0003682	Molecular Function	73%
Blast2go	methyl-CpNpG binding	GO:0010428	Molecular Function	73%
Blast2go	chromocenter	GO:0010369	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	SRA-YDG	IPR003105	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQP3

Fln msg: Overlapping hits, possible frame ERROR between 76 and 76, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 144 - 830

Fln protein: NETSLNADQEKAIKELHSKYPRYSxxLLTNMLADQDGDLKELEALLKTLQRQEIRAANRKVSGPSSSKATDNTDVSTESPPSKLQNASKGKTRGKSAKKRESNTTLSVGRVHKTRRKTASDDVKAASKTPTRDNVNSASPSSPH

Protein Length: 145

Fln nts: GAATGAAACGTCTTTGAATGCAGATCAAGAAAAGGCCATCAAGGAGCTTCACAGCAAGTATCCTCGTTACTCGxxxxxxCTTTTGACGAATATGCTGGCTGATCAGGATGGCGATTTGAAAGAGCTTGAAGCACTCTTAAAAACATTACAACGCCAAGAGATTAGAGCTGCTAATCGAAAGGTGTCAGGTCCATCATCTTCAAAGGCAACAGATAACACAGATGTTTCCACGGAATCACCACCCTCAAAGCTACAGAATGCATCTAAGGGCAAAACCAGAGGAAAGAGTGCCAAGAAGAGAGAAAGTAATACAACTTTATCCGTAGGAAGAGTTCACAAAACGCGTCGAAAAACTGCTTCCGACGATGTGAAGGCCGCTTCTAAAACACCAACAAGGGATAACGTAAACTCTGCATCTCCTTCAAGTCCACATT

Fln Alignment:

Contig8569___NETSLNADQEKAIKELHSKYPRYSEELLTNMLADQDGDLKELEALLKTLQRQEIRAANRKVSGPSSSKATDNTD-VSTESPPSKLQNASKGKTRGKSAKKRESNTTLSVGRVHKTRRKTASDDVKAAS----KTPTRDNVNSASPSSP
B8LQP3_________________NERPLNADQEKSINELHNKYPRYSEELLKNMLADQDGDLKELEALLKTLQRQEIRAANRKVSGPSSSKATDNTNVVSTESSPLKLQNASNGKIKGKSPKKRGRDASSSVGKVYKTRRKTASDNENAKSSGCPKTPTRDNLNSASPSSP

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
131	25		75		0.996473
134		75		25	0.996473
308	33		66		0.997452
312	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain