SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8551

Length: 320 nt

UniGene Fasta

>biog3_v1.0_unigene8551
TCTTCCATTTGGAGATAAACTAAGAAGGATCAATCGCGGTATTTCCGTGTTAGAGGCATCCCATCTTTGATCGTGATTGGTCCAGATGGGAAACTGTAACAAAGAATGCCAGAAGTGCAGTGTCCACTCATGGAGCCAGGGCTTATCCATTCACTGATGCTCATTTTCAAAGGCTGCAGAAGGAGATGAAAGAGCTTGTTGACAAATCTCCCAAGGAGATCAAGTACAGCCAGCATGAACACCAACTTGTACTGACACAAAGGCCTGTGTTCGTCTGTGATGGATGCAACAAAGACGGTAGTGCGTGGTCCTATTATTGC

Ace file of the UniGene biog3_v1.0_unigene8551

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15539	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	probable nucleoredoxin 1-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	71%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	71%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	71%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR017936	-	-
Sma3		IPR012335	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg: Overlapping hits, possible frame ERROR between 93 and 90, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 51 aas, your sequence is shorter than subject: 107 - 586

Fln protein: SSIWR*TKKDQSRYFRVRGIPSLIVIGPDxxxVTKNARSAVSTHGARAYPFTDAHFQRLQKEMKELVDKSPKEIKYSQHEHQLVLTQRPVFVCDGCNKDGSAWSYYC

Protein Length: 108

Fln nts: TCTTCCATTTGGAGATAAACTAAGAAGGATCAATCGCGGTATTTCCGTGTTAGAGGCATCCCATCTTTGATCGTGATTGGTCCAGATxxxxxxxxxGTAACAAAGAATGCCAGAAGTGCAGTGTCCACTCATGGAGCCAGGGCTTATCCATTCACTGATGCTCATTTTCAAAGGCTGCAGAAGGAGATGAAAGAGCTTGTTGACAAATCTCCCAAGGAGATCAAGTACAGCCAGCATGAACACCAACTTGTACTGACACAAAGGCCTGTGTTCGTCTGTGATGGATGCAACAAAGACGGTAGTGCGTGGTCCTATTATTGC

Fln Alignment:

Contig8551___TKKDQSRYFRVRGIPSLIVIGPDGxTVTKNARSAVSTHGARAYPFTDAHFQRLQKEMKELVDKSPKEIKYSQHEHQLVLTQRPVFVCDGCNKDGSAWSYYC
B8LKG4_________________TEKNLSRYFRVPGIPTLIILGPDGxTVTSNARSAVSTHGARAYPFTEAHFQRLQKEMKELVENSPKEIKYNQHEHPLVLTQRPVFVCDGCNKDGSAWSYYC

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
160	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain