SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8520

Length: 265 nt

UniGene Fasta

>biog3_v1.0_unigene8520
GTGATCAAATGCCAGGGAGGCAAGCGGAAGTGCGACGCGGTCGAAGATGAGGAGGGCTGTAAATATCTGCGAATGGAAAGAAAGAGAAGCCCTAAGTTTACCAGGAAATTCACGCTGCCTGGAGATGTCAATGTCGAGGGCATTTCTGCATCGTGTGTGGATGGGGTTTTGACTGTTACTGTGCCCAGGATTCCGCCTGCCATGAAGTCCAAAACAATTCAGATTTCCGTGAAGTGACGACAAAGGAAGGCGTTTTGCTCAACCC

Ace file of the UniGene biog3_v1.0_unigene8520

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15842	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Small heat stress protein class CIII n=1 Tax=Solanum peruvianum RepID=Q94EN7_SOLPE	-	-	5.0e-31	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	kda class iii heat shock protein	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	response to heat	GO:0009408	Biological Process	67%
Blast2go	response to high light intensity	GO:0009644	Biological Process	67%
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Heat shock protein Hsp20	IPR002068	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSY4

Fln msg: your sequence is shorter than subject: 79 - 157

Fln protein: VIKCQGGKRKCDAVEDEEGCKYLRMERKRSPKFTRKFTLPGDVNVEGISASCVDGVLTVTVPRIPPAMKSKTIQISVK*

Protein Length: 80

Fln nts: GTGATCAAATGCCAGGGAGGCAAGCGGAAGTGCGACGCGGTCGAAGATGAGGAGGGCTGTAAATATCTGCGAATGGAAAGAAAGAGAAGCCCTAAGTTTACCAGGAAATTCACGCTGCCTGGAGATGTCAATGTCGAGGGCATTTCTGCATCGTGTGTGGATGGGGTTTTGACTGTTACTGTGCCCAGGATTCCGCCTGCCATGAAGTCCAAAACAATTCAGATTTCCGTGAAGTGA___CGACAAAGGAAGGCGTTTTGCTCAACCC

Fln Alignment:

Contig8520___VIKCQGGKRKCDAVEDEEGCKYLRMERKRSPKFTRKFTLPGDVNVEGISASCVDGVLTVTVPRIPPAMKSKTIQISV
A9NSY4_________________VIKYQGGKRKREGVEDEECCKYLRMERKRNPKFARKFTLPGDANVEGISASCVDGVLTVTVPRIPPAMKSKTIQISV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
162	25		75		0.996473
163	75		25		0.996473
169			33	33	0.997753
244		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain