SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8498

Length: 1009 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8498 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15743	16/38
SustainPine v2.0	sp_v2.0_unigene24290	1/38
SustainPine v2.0	sp_v2.0_unigene24382	20/38

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gly_rich multi-domain protein	-	-	7.0e-07	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	fibroin heavy chain precursor (fib-h) (h-fibroin)-like protein	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nitrogen regulatory protein P-II, urydylation site	IPR002332	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTB8

Fln msg:

Fln protein: MEPSTKVLCLHVLVLSLFLFNMEARESRFFDKEPAYYNPAGGSNTVGYGEGYTRSGVDNAFGTGSGNGYGSYRGQENGDGYVYGDSEASRAGSASEARYGEAGSGYRPGSARAGEYYSENTGVGNDVGARYKKNSGKGAGSGYRSEAYGSGAGSDWHGPYTGYGQGGDQYDSGYAGRSESNGAYRSGYGGGYVTSSGNRNGYEAGSGIGNAEYVADNGYYKQTP*

Protein Length: 226

Fln nts: CGGGTGTTCTAGTCTGCTCAGTAGCTAATCTAGCTCTGACTGAGCTTAATATCGAAGATAGAATCGATA_-_ATGGAGCCTAGCACTAAAGTTCTGTGCCTCCATGTGCTTGTATTGAGTCTGTTTCTCTTCAACATGGAGGCGAGGGAGAGCAGATTCTTTGACAAAGAGCCTGCTTACTACAACCCTGCTGGTGGATCAAATACTGTTGGGTACGGAGAAGGTTACACCAGGAGCGGTGTAGATAATGCTTTCGGAACCGGTTCCGGTAATGGCTACGGTTCCTACCGAGGCCAGGAAAACGGTGATGGTTATGTGTATGGCGACAGTGAGGCTTCCCGCGCTGGTTCTGCGAGCGAAGCCCGCTATGGAGAAGCGGGGAGCGGGTATCGTCCCGGGTCAGCTAGAGCTGGTGAGTACTATTCAGAGAATACGGGGGTCGGGAACGACGTGGGTGCCAGATACAAAAAGAACTCCGGTAAGGGTGCTGGCTCAGGGTACCGTAGTGAAGCTTATGGTTCCGGCGCCGGCTCCGATTGGCATGGCCCTTATACCGGCTATGGGCAAGGTGGTGATCAGTACGACTCGGGCTACGCTGGACGTTCGGAAAGCAATGGCGCGTATCGTTCAGGTTATGGTGGTGGCTACGTTACCAGTTCCGGTAACCGTAATGGCTACGAAGCGGGCTCTGGCATTGGCAACGCAGAATATGTTGCCGACAATGGTTATTATAAGCAGACTCCTTAA___ACACATATTCAGGACTTTGGTAATAAGGCCTCTTAAAGTTGTGTATATGACTATTTGGGTTTCATTTCAGTTGTACTTATAACATAGCAAGCTTTCCATGTATCTGCTTTCGGAATTTGGTATCTAGGTTCCAATGCTATCAAGTTTAATCTGGTAACAGTTTATGATGTCTATGGAAAATCCATTTAATTTAGTTTGTTTTAAATGGATTAGTTTGGAGCCAATCACGACATAAATTAGATTTAAAGTCGAGTTATTTGACATT

Fln Alignment:

Contig8498___MEPSTKXXXXXXXXXXXXLFNMEARESRFFDKEPAYYNPAGGSNTVGYGEGYTRSGVDNAFGTGSGNGYGSYRGQENGDGYVYGDXXXXXXXXXXXXRYGEAGSGYRPGSARAGEYYSENTGVGNDVGARYKKNSGK----GAGSGYRSEAYGSGAGSDWHXXXXXXXXXXXXXXXXXXGRSESNGAXXXXXXXXXXXXXGNRNGYEAGSGIGNAEYVADNGYYKQTP
C0PTB8_________________MAPSTKILCLAVLSFSLFLCNMEARESRFFNKEPAFDNPNGGSNTAGYGESYTTSGVDNAYGAGSGNGYGSYRGQGNGNGYVYGNSEASRSGSGSGAAYGEGGSGYRSGSAKAGEYYSENSALGDDAGAGYKESSGKGASYGAGSGYHGEAYGSGSGSDWHGSNGGYGQGSDQYASGYGGRSESNSAYRSGFGGGYVTGSGSGNSYEAGSGVGKAEYVADNGYYKETP

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
293	20			80	0.995493
294		20	80		0.995493
296		80		20	0.995493
304		25		75	0.996473
368	20			80	0.995493
370			80	20	0.995493
371		80	20		0.995493
372		80		20	0.995493
603	16	83			0.994512
604	83			16	0.994512
605			83	16	0.994512
651	40		60		1.0
652		40	60		1.0
653	40		60		1.0
654		60		40	1.0
778	20		80		0.995493
779		80		20	0.995493
800	20			80	0.995493
802		80		20	0.995493
803		80	20		0.995493
810	20			80	0.995493
861	25			75	0.996473
862		25	75		0.996473
863	25	75			0.996473
865		75		25	0.996473
929	25		75		0.996473
972			85	14	0.993533
1001			33	66	0.997452
1003		33	66		0.997452
1004	66		33		0.997452
1005	33		33	33	0.997753
1006		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain