SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8494

Length: 363 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene8494 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16048	5/7
SustainPine v2.0	sp_v2.0_unigene60985	1/7
SustainPine v2.0	sp_v2.0_unigene63637	1/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LQY6_ARALL	-	-	4.0e-16	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	leucine-rich repeat family protein	-	-	0.0	70%

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
215	16			83	0.994512
232	16		83		0.994512
233		16	83		0.994512
234	16	83			0.994512
318		66	33		0.997452
355	33		66		0.997452
357	33	66			0.997452
358	66			33	0.997452
359		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
195	207	ATAG ATAG ATAG A	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain