SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8491

Length: 1107 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene8491

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9698	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	Ulp1 protease family protein, putative [Solanum demissum]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	sentrin sumo-specific	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	0.0	68%
Blast2go	cysteine-type peptidase activity	GO:0008234	Molecular Function	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB5

Fln msg: Distance to subject end: 79 aas, your sequence is shorter than subject: 368 - 586

Fln protein: CECLCSRYRCRRNREILQCRNHKHEIEAEAGSRIKAEGAFYVTPCESVASEVNFKLEDDSLNPGRSIIRNPALKRAANKNKGQPLSLKSRRRKKVSGSIDDFESENNCTDKLPAVLDLDEGSLANNRKVTSLVCKDGKSVVQSSMPCGVIGSKKIPDISCEEPHLVLLIPTRDKQEETRNRWSPKKGPGKKSMQLRGRNAAVKLDNYLDTDVIDRYMEHIWKKLPKHKRESCTYLDCLWFSMYLEEALSFNVLKWTKAKRIFTKQYVFIPIVHWGHWNLLILCHFGEDLSSEARTPCMLLLDSLKEADPNRLEPLIRKFLIDLHKEDGREDGDKIIAEIPLLVPEVPQQTNDNDCGVFLLHFIDLFLQ

Protein Length: 369

Fln nts: ACTGCGAATGCCTTTGCTCGAGGTACAGGTGCCGTAGAAATCGGGAAATCCTACAATGTAGAAATCATAAGCATGAGATTGAAGCTGAAGCCGGGAGCAGGATTAAGGCCGAGGGTGCTTTCTATGTGACACCGTGCGAGTCTGTGGCTTCGGAAGTCAATTTCAAGCTGGAAGACGATTCTTTGAATCCTGGGCGCAGCATTATTCGAAACCCTGCCTTGAAGAGAGCTGCAAATAAAAATAAAGGGCAACCGCTGTCTTTGAAGAGTCGGAGAAGAAAAAAGGTCTCTGGCTCGATCGATGATTTTGAATCTGAGAATAACTGTACAGATAAACTTCCTGCTGTGTTGGATTTGGATGAAGGGAGTTTGGCCAATAATCGTAAAGTAACTAGTTTGGTATGCAAAGATGGAAAATCTGTTGTGCAATCCTCAATGCCTTGTGGTGTAATTGGGTCCAAGAAAATTCCTGACATTAGTTGCGAAGAGCCGCATCTTGTGCTTTTGATCCCAACACGTGATAAGCAGGAGGAGACTCGTAATAGGTGGTCTCCTAAGAAAGGACCAGGGAAGAAATCAATGCAATTACGGGGTCGAAATGCGGCTGTGAAGCTGGACAACTACCTCGATACAGACGTCATTGATAGATACATGGAGCATATATGGAAGAAACTTCCCAAGCACAAACGGGAATCATGTACTTACCTGGATTGTTTATGGTTTTCGATGTACCTGGAAGAGGCACTATCCTTCAATGTCTTGAAATGGACAAAAGCAAAACGCATTTTTACCAAGCAATATGTTTTCATTCCAATTGTTCACTGGGGTCATTGGAATCTTTTGATTCTCTGTCATTTTGGAGAGGATCTCAGTTCGGAAGCAAGAACACCATGTATGTTGCTCTTGGATTCACTGAAGGAAGCCGACCCAAACCGGCTTGAACCATTGATAAGAAAGTTCCTCATAGACCTCCATAAAGAGGATGGAAGGGAGGATGGTGACAAAATTATTGCAGAGATCCCTCTCTTGGTTCCTGAAGTGCCTCAGCAGACAAATGACAATGACTGTGGCGTTTTCCTGCTCCATTTCATTGATCTCTTTTTGCAAT

Fln Alignment:

Contig8491___SRYRCRRNREILQCRNHKHEIEAEAGSRIKAEGAFYVTPCESVASEVNFKLEDDSLNPGRSIIRNPALKRAANKNKGQPLSLKSRRRKKVSGSIDDFESENNCTDKLPAVLDLDEGSLANNRKVTSLVCKDGKSVVQSSMPCGVIGSKKIPDISCEEPHLVLLIPTRDKQEETRNRWSPKKGPGKKSMQLRGRNAAVKLDNYLDTDVIDRYMEHIWKKLPKHKRESCTYLDCLWFSMYLEEALSFNVLKWTKAKRIFTKQYVFIPIVHWGHWNLLILCHFGEDLSSEARTPCMLLLDSLKEADPNRLEPLIRKFLIDLHKEDGREDGDKIIAEIPLLVPEVPQQTNDNDCGVFLLHFIDLFLQ
B8LRB5_________________SMYKHRRNRESLKYRHHKHEIEAETGSRIQAEGSLGAIACESVASEVNFKLEDNSFNRRRSIVQNTAFKGAADKNKGQSMSLKSRGRENV---FDDFESENNCTDELSVVLGLDERSLASNCKITNFVCKDGKSVVQSSTPCSVIGSKKIP----EDPQLMVVIPILDEQEETCNKLSPKKGPGKKSMQLQCRNAVVNLDNYLDTDIIDRYIEHIWKKHPKYKQESCTYLDCLWFSMYLEEALSFNILKWTKAKHIFSKQYVFIPIVHWGHWNLLILCHFGEDLSSESRTPCMLLLDSLKETEPNRLEPLIRKFLVDVHNEDGRQDGDKIIAKIPLLVPEVPQQTNGNDCGVFLLHFVDKFLK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
96	33		66		0.997452
100		66		33	0.997452
539	25			75	0.996473
541	25		75		0.996473
543	75			25	0.996473
921	20		80		0.995493
922		20	80		0.995493
924	80			20	0.995493
925			80	20	0.995493
949	20			80	0.995493
1033	25		75		0.996473
1034		25	75		0.996473
1063	33		66		0.997452
1064		33		66	0.997452
1066	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain