SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8488

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene8488
GGACTCAATGAGGGGATTCTGCAGGACGATCACTCGGCTTCACCTTTCGCAGGGCTCTGTCATGGCCATGGCCATGGCGCATTCTCGGCTGCTTCAGGGGCCTTTAACGCGCCCACGATGCATCCCAACCTGGTTTCCACACTCAAGAACGTCATATCCCAGCAGAGCATGGAGGATGAGCTGCAGTTTTTGCAGACACCTCATCACGGCTTCGAGGACACAGGCCTCGCTTCCGATGATGGGTTTCTGAATTATCAGTCCGAAGAAGGGTTCCAGCCACCCGCGCAGCAGCTGGACAACAGCGAAAACACCTGCAAGAAGAAGCAGGCACAACAGAAATCCAGGCGGAGTCCCAAGGTGGGCGGCGACGAGGAGGATCGAGAGGATCGACAGATCGCGATTGTGCCAGTCGATCTGATCCAAAACAGGCGGCCCTTTAAGTGCGCCTACAGCGGCTGCGACAAGACTTTCAAGAATCCGCAGACACTGAAAATGCATCACAAGACTCACTACACGGACGATGCTGCTGAGAAACGGCTG

Ace file of the UniGene biog3_v1.0_unigene8488 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1152	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ethanol induced 1 isoform 1 [Mus musculus] emb\|CAM28029.1\| ethanol induced 1 [Mus musculus]	-	-	3.0e-14	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	57%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	57%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	57%
Blast2go	intracellular	GO:0005622	Cellular Component	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQV8

Fln msg: Distance to subject end: 205 aas, your sequence is shorter than subject: 180 - 424

Fln protein: GLNEGILQDDHSASPFAGLCHGHGHGAFSAASGAFNAPTMHPNLVSTLKNVISQQSMEDELQFLQTPHHGFEDTGLASDDGFLNYQSEEGFQPPAQQLDNSENTCKKKQAQQKSRRSPKVGGDEEDREDRQIAIVPVDLIQNRRPFKCAYSGCDKTFKNPQTLKMHHKTHYTDDAAEKRL

Protein Length: 181

Fln nts: GGACTCAATGAGGGGATTCTGCAGGACGATCACTCGGCTTCACCTTTCGCAGGGCTCTGTCATGGCCATGGCCATGGCGCATTCTCGGCTGCTTCAGGGGCCTTTAACGCGCCCACGATGCATCCCAACCTGGTTTCCACACTCAAGAACGTCATATCCCAGCAGAGCATGGAGGATGAGCTGCAGTTTTTGCAGACACCTCATCACGGCTTCGAGGACACAGGCCTCGCTTCCGATGATGGGTTTCTGAATTATCAGTCCGAAGAAGGGTTCCAGCCACCCGCGCAGCAGCTGGACAACAGCGAAAACACCTGCAAGAAGAAGCAGGCACAACAGAAATCCAGGCGGAGTCCCAAGGTGGGCGGCGACGAGGAGGATCGAGAGGATCGACAGATCGCGATTGTGCCAGTCGATCTGATCCAAAACAGGCGGCCCTTTAAGTGCGCCTACAGCGGCTGCGACAAGACTTTCAAGAATCCGCAGACACTGAAAATGCATCACAAGACTCACTACACGGACGATGCTGCTGAGAAACGGCTG

Fln Alignment:

Contig8488___EGILQDDHSASPFAGLCXXXXXXXXXXXXXXFNAPTMHPNLVSTLKNVISQQSMEDELQFLQTPHHGFEDTGLASDDGFLNYQSEEGFQPPAQQLDNSENTCXXXXXXXKSRRSPKVGGDEEDREDRQIAIVPVDLIQNRRPFKCAYSGCDKTFKNPQTLKMHHKTHYTDDAAEKRL
B8LQV8_________________EGILQDDHSASPFEGLCHGHGHGGFSAAAGAFNAPTMHPNLVSTLKNVISQQNLDDDLHFLHTPHHGFEDAGLASDDGFLNYQTEAGFQPPAEQQNNNNDDNKKKQAQQKNRRSPKLGGDEEDREDRQIATVSVDLIQNRRPFKCAYGGCDKTFKNPQTLKMHHKTHYTDDAAEKRL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
48	33			66	0.997452
50			33	66	0.997452
209		25		75	0.996473
211			75	25	0.996473
214	25	75			0.996473
215		75		25	0.996473
217			75	25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
463	480	GCCATG GCCATG GCCATG	18

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain