SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene8439

Length: 211 nt

UniGene Fasta

>biog3_v1.0_unigene8439
TAGTAAAGATGTAGATGAACCTTTGCTGAAGAGTGAGTTGAGCAACCCTGCTCTATTGGCAGGACAGTGGTCTCAGCTTTGCCCAACCTGCAAGATTGTCAGGCCTCCGCGCTCCAAGCATTGTTCCACTTGCAACCGCTGCGTTGAGCAATTTGACCACCATTGCCCTTGGATATCCAATTGTGTTGGAAAGAGGAATAAGTGGGACATT

Ace file of the UniGene biog3_v1.0_unigene8439

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11392	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	S-acyltransferase TIP1 [Arabidopsis thaliana] sp\|Q52T38.1\|ZDH22_ARATH RecName: Full=S-acyltransferase TIP1; AltName: Full=Ankyrin repeat-containing S-palmitoyltransferase; AltName: Full=Palmitoyltransferase TIP1; AltName: Full=Protein TIP GROWTH DEFECTIVE	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	65%
Blast2go	s-acyltransferase tip1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	cell tip growth	GO:0009932	Biological Process	75%
Blast2go	S-acyltransferase activity	GO:0016417	Molecular Function	75%
Blast2go	acyl binding	GO:0000035	Molecular Function	75%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	75%
Blast2go	membrane	GO:0016020	Cellular Component	75%
Blast2go	plastid	GO:0009536	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	0.0	-
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWT0

Fln msg: Distance to subject end: 225 aas, your sequence is shorter than subject: 70 - 429

Fln protein: SKDVDEPLLKSELSNPALLAGQWSQLCPTCKIVRPPRSKHCSTCNRCVEQFDHHCPWISNCVGKRNKWDI

Protein Length: 71

Fln nts: TAGTAAAGATGTAGATGAACCTTTGCTGAAGAGTGAGTTGAGCAACCCTGCTCTATTGGCAGGACAGTGGTCTCAGCTTTGCCCAACCTGCAAGATTGTCAGGCCTCCGCGCTCCAAGCATTGTTCCACTTGCAACCGCTGCGTTGAGCAATTTGACCACCATTGCCCTTGGATATCCAATTGTGTTGGAAAGAGGAATAAGTGGGACATT

Fln Alignment:

Contig8439___CPTCKIVRPPRSKHCSTCNRCVEQFDHHCPWISNCVGKRN
A9NWT0_________________CDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGQRN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
14	33		66		0.997452
19	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain